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4 protocols using tim3 clone rmt3 23

1

Immune Profiling of Lung Infiltrates

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Isolated lung infiltrating immune cells were stained with fluorescently labeled anti-mouse antibody CD45 (clone 30-F11, BioLegend), CD3 (clone 17A2, BioLegend), CD49b (clone DX5, BioLegend), CD19 (clone 6D5, BioLegend), CTLA-4 (clone UC10-4B9, Invitrogen), CD69 (clone H1.2F3, BioLegend), TIM3 (clone RMT3-23, Invitrogen), FOXP3 (clone FJK-16s, eBioscience), PD-1 (clone 29F.1A12, BioLegend), KI-67 (clone 16A8, BioLegend), CD4 (clone GK1.5, BioLegend), CD8 (clone 53-6.7, BioLegend), H-2 (clone M1/42, BioLegend), Ly6G (clone 1A8, BioLegend), CD103 (clone 2E7, BioLegend), F4/80 (clone BM8, BioLegend), CD86 (clone GL-1, BioLegend), PD-L1 (clone 10F.9G2, BioLegend), Ly6C (clone HK1.4, BioLegend), CD206 (clone C068C2, BioLegend), CD11B (clone M1/70, BioLegend), CD11C (clone N418, BioLegend), CD4 (clone RM4-4, BioLegend), CD8 (clone 53-6.7, BioLegend), GZMB (clone GB11, BD Horizon), CD62L (clone MEL-14, BioLegend), and CD44 (clone IM7, BioLegend).
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2

Comprehensive Immune Cell Profiling

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Isolated lung infiltrating immune cells were stained with fluorescently labeled anti-mouse antibody CD45 (clone 30-F11, BioLegend), CD3 (clone 17A2, BioLegend), CD49b (clone DX5, BioLegend), CD19 (clone 6D5, BioLegend), CTLA-4 (clone UC10-4B9, Invitrogen), CD69 (clone H1.2F3, BioLegend), TIM3 (clone RMT3-23, Invitrogen), FOXP3 (clone FJK-16s, eBioscience), PD-1 (clone 29F.1A12, BioLegend), KI-67 (clone 16A8, BioLegend), CD4 (clone GK1.5, BioLegend), CD8 (clone 53-6.7, BioLegend), H-2 (clone M1/42, BioLegend), Ly6G (clone 1A8, BioLegend), CD103 (clone 2E7, BioLegend), F4/80 (clone BM8, BioLegend), CD86 (clone GL-1, BioLegend), PD-L1 (clone 10F.9G2, BioLegend), Ly6C (clone HK1.4, BioLegend), CD206 (clone C068C2, BioLegend), CD11B (clone M1/70, BioLegend), CD11C (clone N418, BioLegend), CD4 (clone RM4-4, BioLegend), CD8 (clone 53-6.7, BioLegend), GZMB (clone GB11, BD Horizon), CD62 L (clone MEL-14, BioLegend), and CD44 (clone IM7, BioLegend).
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3

Isolation and Characterization of Tumor-Infiltrating Lymphocytes

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In order to obtain tumor infiltrating lymphocytes, tumors from third passage B6CaP cells grown in parallel were mechanically disintegrated and digested for 1 h at 37°C in RPMI media with 10 mg/ml of Collagenase IV and 1 mg/ml of DNase. After digestion, white blood cells were isolated from tumors using anti CD45 antibodies conjugated with magnetic beads (Miltenyi Biotec, Bergisch Gladbach, Germany) according to manufacturer’s protocol. Tumor infiltrating leukocytes were characterized with antibodies against CD3 (clone 145-2C11, eBioscience), CD19 (clone 1D3, BD Biosciences), CD49b (clone DX5, BD Biosciences), CD4 (clone H129.19, BD Biosciences), CD8 (clone 53-6.7, BD Biosciences), PD-1 (clone J43, eBioscience), Tim-3 (clone RMT3-23, eBioscience), Lag-3 (clone C9B7W, eBioscience) and CTLA4 (clone UC10-4F10-11, BD Biosciences). Flow through cells not captured by bead selection were stained with PDL-1 antibody (clone MIH5, eBioscience). For viability staining we used Live/Dead Aqua (Life Technologies). Gating controls were prepared with Fluorescence Minus One (FMO) stains of splenocytes or isotype control for tumor cells. Data were analyzed with FlowJo software (TreestarInc, Ashland, OR, USA).
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4

Immunophenotyping of Lung Infiltrating Cells

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Lung infiltrating immune cells were stained with different combinations of fluorochrome-coupled antibodies against mouse CD45 (clone 30-F11, Biolegend), CD3 (clone 17A2, Biolegend), CD4 (clone GK1.5, Biolegend), CD8 (clone 53-6.7, Biolegend), CD11b (clone M1/70, Biolegend), CD11c (clone N418, Biolegend), Foxp3 (clone FJK-16s, eBioscience), CD279 (PD-1, clone 29F.1A12, Biolegend), CD152 (CTLA-4, clone UC10-4B9, eBioscience), Tim-3 (clone RMT3–23, eBioscience), CD223 (Lag-3, clone C9B7W, Biolegend), IL-2 (clone JES6-5H4, Biolegend), IFNγ (clone XMG1.2, Biolegend), BrdU (clone Bu20a, Biolegend). Jurkat, PD-1-Jurkat, and human PBMCs were stained with fluorochrome-coupled antibodies against human CD3 (clone HIT3a, Biolegend), CD4 (clone OKT4, Biolegend), and CD279 (PD-1, clone EH12.2H7, Biolegend).
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