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13 protocols using bx4 microscope

1

Comprehensive CNT Characterization Protocol

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The different CNTs were characterized by scanning electron microscopy using a JEOL SEM, model JSM-5800 LV.
Raman spectroscopy was performed using a micro-Raman LabRAM HR (Horiba Jobn Yvon, Piscataway, NJ, USA) coupled to an Olympus BX-4 microscope (Olympus, Miami, FL, USA) and Spectrum Gx (Perkin Elmer, Waltham, MA, USA). The sample was excited using a laser line at a wavelength of 632.8 nm, and all measurements were performed at room temperature.
The functional groups present in different CNTs were determined by Fourier Transform Infrared (FTIR) spectroscopy in transmittance mode using a Carry 600 Series FTIR Spectrometer (Agilent Technologies, Santa Clara, CA, USA) equipped with a zinc selenide accessory in attenuated total reflectance (ATR) mode; the wavenumber ranged of 600 cm−1 to 4000 cm−1. CNTs were deposited as dry powders onto a zinc selenide (ZnSe) window, no solvents were used in this process, and all determinations were made at room temperature.
A thermogravimetric analysis (TGA) was performed using a SDT Q600 V20.9 Build 20 (TA Instruments, New Castle, DE, USA) heated at a rate of 10 °C/min to 1000 °C, and air was introduced into the samples at a rate of 25 mL/min.
Finally, 10% SDS–PAGE was carried out, and the proteins were visualized using the ProteoSilver™ Silver Stain Kit (Sigma–Aldrich) to demonstrate the presence of proteins in the sample.
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2

Immunohistochemical Analysis of Oxidative Stress

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5 µm lung sections were incubated in DNPH solution in the dark for 30 min and then blocked for 30 min at room temperature. The sections were then incubated with primary antibody (1:100) at 4 °C overnight and were then incubated with biotinylated secondary antibody for 1 h. After being incubated with the streptavidin-conjugated HRP for 30 min, the slides were incubated with the DAB-A/B mixture. The slides were examined using a Zeiss Axio Observer 7 microscope (Zeiss, Oberkochen, Germany) or an Olympus BX4 microscope (Watford, UK) under a constant exposure level.
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3

Assessing Microglial Activation in Chronic EAE

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To assess the microglial activation, oxidative response and demyelination in the CNS, treated and untreated groups of C57BL/6 mice were euthanized at the chronic stage of EAE disease (day 30) by CO2 asphyxiation. Their spinal cords of the lumbar region were removed and fixed in 10% buffered formalin. After paraffin embedding, transverse sections of spinal cord of 12 μm-thick (nine sections per animal) were stained with Iba-1, iNOS, and NF-H, respectively. The spinal cord sections from five representative mice (BCP treated and untreated) were processed and stained with Hoechst 33342 dye (for nuclei stain). A Q imaging digital camera connected to an Olympus Bx4 microscope was used. The immunostaining was assessed at four levels of the lumbar spinal cord. Specifically, four alternate 5-μm sections of the lumbar spinal cord with an individual distance of 150 μm were obtained between L4 and L6. A threshold optical density that best discriminated staining from the background was obtained using the NIH ImageJ 1.36b imaging software (NIH, Bethesda, MD, USA). We captured four images of each spinal cord subregion (dorsal, ventral, lateral, central) per section (eight images per section and 32 images per mouse, n = 5 animals/group). Then, the total pixel intensity was determined and the data were expressed as optical density (O.D.).
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4

Immunostaining of NF-kB in CRC Cell Lines

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Fixed SW480 and SW620 cells in 4% polyformaldehyde, then sealed them in PBST (Sigma Aldrich) with donkey serum for 1 h before inoculation with the primary antibody: NF-κB (3039, 1:1000, Cell Signaling Technology) overnight in PBST at 4°C, adding FITC or rhodamine-coupled secondary resistance (1:400, Millipore, UK). Later our group re-dyed the slides with 4’, 6-diamidino-2-phenylindole (DAPI Dye) as well as examined them through Olympus BX4 microscope (Watford, UK). At last, we quantified immunofluorescence using ImageJ (National Institutes of Health, Maryland).
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5

Lung Injury Histopathological Assessment

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Lung sections (5 μm) were stained with hematoxylin/eosin, and 10 fields/animal were randomly chosen to assess lung morphology under an Olympus (Watford, UK) BX4 microscope. The severity of lung injury was blindly assessed with a semi-quantitative scale system from 0 to 3 grades: nil (0), mild (1), moderate (2), or severe (3) injury based on the presence of exudates, hyperemia or congestion, infiltration of neutrophils, alveolar hemorrhage, presence of debris, and cellular hyperplasia.21 (link),22 (link)
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6

Histopathological Analysis of Tissue Inflammation

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Liver, lung, and whole intestines were collected at indicated time point, flushed and fixed in 10 % paraformaldehyde, embedded in paraffin, cut in sections, and stained with hematoxylin and eosin (H&E). All tissues were prepared and stained at the Histology Consultation Services, Inc in Everson, WA. Images were captured with an Olympus BX4 microscope equipped with a Q-color3 camera and 10× numerical aperture objective lens. Magnification for each captured image is specified for each experiment in the figure legend. Grading of histopathological inflammation was performed using a grading scale from 0 to 4 in a blind fashion by a board-certified pathologist. Grading score criteria of tissue inflammation and necrosis ranged from 0 to 4 with 0 = no inflammation, 1 = minimal/intermediate, 2 = mild, 3 = moderate, and 4 = severe with tissue necrosis. This grading score for liver, lung, and gastrointestinal tract followed the previously published grading systems [21 (link)].
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7

Visualizing HCV Protease Activity In Vivo

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BALB/c nude mice (n = 3) bearing established HCC36 and NS3/4A-HCC36 (100–200 mm3) tumors in their right and left hind legs, respectively, were intravenously injected with 500 μM (in 100 μL) TAT-ΔNS3/4A-FITC and sacrificed 4 h later. Tumors were excised and embedded in OCT compound (Tissue-Tek, CA) in liquid nitrogen. The adjacent tumor sections either directly detect the FITC-fluorescent intensity to observe the accumulation of TAT-ΔNS3/4A-FITC probe or stained with a 520 HCV protease Assay Kit (AnaSpec) to visualize NS3/4A activity. The sections were examined on an upright BX4 microscope (Olympus, Melville, NY, USA) or viewed under phase contrast or fluorescence fields on an inverted Axiovert 200 microscope (Carl Zeiss Microimaging, Thornwood, NY, USA).
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8

Quantifying Apoptosis and Proliferation

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After treatments, SKOV-3 or PC-3 cells were fixed in 4% paraformaldehyde, then blocked with donkey serum in PBST (Sigma Aldrich, St. Louis, USA) for 1 hour followed by the primary antibody: rabbit anti-cleaved caspase 3, 8 or 9 (Abcam, Cambridge, UK), mouse anti-caspase 3 (Abcam, Cambridge, UK), mouse anti-Ki-67 (Dako, Cambridge, UK), rabbit anti-GSK3β, pGSK-3βser9 or pGSK-3βtyr216 (Abcam, Cambridge, UK) (1:200) in PBST overnight at 4 °C followed by FITC or Rhodamine conjugated secondary antibody (Millipore, Watford, UK) (1:400). The slides were counterstained with nuclear dye 4′,6-diamidino-2-phenylindole (DAPI) and mounted with VECTASHIELD Mounting Medium (Vector Laboratories, Burlingame, CA) and then examined using an Olympus BX4 microscope (Watford, UK). Immunofluorescence was quantified using ImageJ (National Institutes of Health, Bethesda, MD, USA). Ten representative regions per section were randomly selected by an assessor blinded to the treatment groups. Values were then calculated and expressed as relative to control.
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9

Nanoparticle Structural Characterization

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Particle size and morphology were investigated using a High-Resolution Transmission Electron Microscope (HRTEM) JEOL JEM-2200FS, operated at 200 kV, and point resolution of 0.1 nm in TEM mode. Preparation of TEM grids was carried out by mixing a small amount of powder with isopropanol (2 mL) followed by sonication, and depositing a drop of this dispersion onto a formvar/carbon copper grid. The crystal structure was analyzed by X-ray diffraction (XRD (PANalytical, Almelo, The Netherlands)) using a PANalytical Empyrean diffractometer with CuKα radiation in continuous scan mode from 10° to 80° of 2θ with 0.001 step size. Fullprof Suite software (2007, Grenoble, France) was used for data treatment. The crystallite size was estimated by X-ray Diffraction with the Scherrer equation using the broadening of the reflection with the highest intensity (2θ = 28.7°). Raman spectroscopy was carried out using a micro-Raman LabRAM HR Evolution from Horiba (Kyoto, Japan), coupled to an Olympus BX-4 microscope. The wavelength used to excite the sample was 632.8 nm, which was provided with a He-Ne laser, the power was kept at 17 mW, the resolution was 1 cm−1 and the diffraction grating was 600 L/mm; all measurements were performed at room temperature. The power of the laser was varied between 5% and 10%, depending on the sample.
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10

Histological Grading of Lung Injury

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Lung grafts were fixed in 4% parafamydehyde and paraffin. Sections of 5 µm thickness were taken from lung specimens, and hematoxylin & eosin (H&E) staining was carried out. Lung morphology in each graft (10 fields at x 20 magnifications) was evaluated by an observer blinded to the treatment using an Olympus BX4 microscope (Watford, UK) under a constant exposure level. The score for each field was calculated from the sum score of 10 areas chosen at random. Lung injury was categorised as Grade 0: normal appearance, negligible damage; Grade 1: mild-moderate interstitial congestion; Grade 2: perivascular oedema formation, partial destruction of pulmonary architecture; Grade 3: moderate lung alveolar damage, low level of nuclear fragmentation; Grade 4: severe destruction of the pulmonary architecture, high level of nuclear fragmentation or condensation 26 (link).
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