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9 protocols using axio observer

1

Single-cell Cytotoxicity Assay with NK Cells

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Time-lapse imaging microscopy in nanowell grids (TIMING) was used to test NK-mediated cytotoxicity at a single-cell scale as previously described68. In brief, the sorted NK cell populations and target cells (K562 or Raji) were labeled with lipophilic PKH dyes, respectively, and loaded onto nanowell arrays. The array was incubated with media that was pre-mixed with Annexin V (BD Bioscience), and monitored in real-time for 5–6 hrs by a Carl Zeiss Axio Observer fitted with a Hamamatsu Orca-Flash sCMOS camera using a 20 × 0.8 NA objective. Images of ~5,000 wells were collected and processed using an in-house algorithm for cell tracking and segmentation69.
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2

Dynamic Monitoring of CAR T-cell Cytotoxicity

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The nanowell manufacture and testing were described previously [40 (link)–42 (link)]. CAR T-cells and targets were labeled with fluorescent dyes, loaded onto arrays, incubated in media + Annexin V (Invitrogen, Carlsbad, CA), and monitored using a Carl Zeiss Axio Observer (Dublin, CA) fitted with a Hamamatsu (Bridgewater, NJ) Orca-Flash sCMOS camera using a 20 × 0.8 NA objective for 6 h at 5-min intervals. Images were collected and processed for ≥500 wells using an in-house algorithm for cell tracking and segmentation [43 (link)].
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3

Microfluidic Monitoring of Antibiotic Effects

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A CellASIC® ONIX2 Microfluidic System (Millipore) connected to a Zeiss fluorescence microscope was used to monitor the growth and survival of S. aureus during exposure to cefoxitin and cefotaxime. Strains MF7 and MF27 were grown overnight in BHI with 5 µg/ml erythromycin. The cultures were rediluted in the same medium with 250 µM IPTG for induction and grown for 3 hr until the cultures reached the exponential phase (OD600 = 0.4). CellASIC® ONIX B04A‐03 Microfluidic Bacteria Plates (Millipore) were primed with medium (BHI with 5 µg/ml erythromycin and 250 µM IPTG), and cells were loaded onto the plates according to the manufacturer's protocol. Images were acquired with a Zeiss Axio Observer with an Orca‐Flash4.0 V2 Digital complementary metal‐oxide‐semiconductor (CMOS) camera (Hamamatsu Photonics) through a 100× PC objective. HPX 120 Illuminator was used as a fluorescent light source. Cells were imaged (phase contrast and GFP fluorescence) every 15th minute for 6 hr during normal growth or exposure to cefoxitin or cefotaxime.
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4

Nanowell Cytotoxicity Assay for CAR T-Cell Interactions

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Nanowell array fabrication and the corresponding cytotoxicity assay to interrogate effector-target interaction at single-cell level were performed as described previously21 (link). Briefly, CAR+ T cells labeled with 1 µM of red fluorescent dye, PKH26 (Sigma) and target cells labeled with 1 µM of green fluorescent dye PKH67 were co-loaded onto nanowell arrays at a concentration of 106 cells/mL. Images were acquired on a Carl Zeiss Axio Observer fitted with a Hamamatsu EM-CCD camera using a 10× 0.3 NA objective. Automated image acquisition of the entire chip was performed at 0 and 6 hour and apoptosis was identified by staining with AnnexinV conjugated to Alexa-647 (Life Technologies, Carlsbad, CA).
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5

Cell Mechanics Characterization with Photothermal Cantilevers

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The device combining the photothermal actuation of microcantilevers and optical microscopy was used as described15 (link). The device was supplemented with a z-piezo stage (CellHesion® module, JPK Instruments), which allowed precisely confining the cell between both cantilevers. The lower, slave cantilever bearing chip was fixed with vacuum grease onto a CNC milled peek wedge with a 10° angle and dimensions of 3.30 × 3.00 × 0.75 mm3 (W × L × H). The angled wedge allowed the readout laser to be reflected from the slave cantilever into the photodiode. The wedge was fixed with vacuum grease to a Petri dish. The device was combined with an inverted optical microscope (Zeiss, Axio Observer) equipped with a OrcaFlash 4.0 camera (Hamamatsu) and a 20x plan apochromat objective with a 0.8 NA (Zeiss). All experiments were conducted in a controlled environmental system16 (link) to maintain cell culture conditions, temperature control (37.0 °C), and pH adjustment using a humidified gas mixture based on synthetic air containing 5% CO2.
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6

Fluorescence-Based Cytolysis Monitoring

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TIL and Tumor cells were labeled with 1 µmol/L of red fluorescence dye (PKH26, Sigma) and 1 µl of green fluorescence dye (PKH68, Sigma) respectively. The cells were loaded onto nanowell at concentration of 1×106/mL. Target cell cytolysis mediated by TIL was monitored using a Carl Zeiss Axio Observer fitted with Hamamatsu EM-CCD camera using 10 × 0.3 NA objective. Apoptotic cells became green when stained with Annexin V conjugated with Alexa 647as previously described (22 (link)).
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7

Visualizing Complement Deposition on Bacteria

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Immunofluorescence microscopy was performed as previously described125 (link), with modifications. Bacteria were prepared as described above under “Bacterial Survival Assays in Blood” and incubated with 10% (v/v) NHS or HI-NHS for 45 min at 4 °C under shaking. The samples were washed twice with PBS supplemented with 1% BSA (Sigma) (PBS/BSA). Next, the bacteria were fixed by PBS/BSA containing 4% paraformaldehyde (PFA, Alfa Aesar) for 20 min at RT. Bacteria were washed once with PBS/BSA, blocked in PBS/BSA for 1 h at RT, and incubated with mouse anti-C5b-9 (1 μg ml−1, aE11, Santa Cruz) followed by incubation with Alexa Fluor 488-conjugated goat anti-mouse IgG (1 μg ml−1, Life Technologies) for 45 min. Bacteria were washed once with PBS/BSA and then with Hanks Balanced Salt Solution (HBSS, Gibco). Ultimately, the pellet was resuspended in HBSS supplemented with the lipophilic dye FM5‐95 (Invitrogen, 10 μg ml−1) to label bacterial membranes. Labeled bacterial cells were mounted onto glass slides (covered with a thin layer of agarose gel) and secured with coverslips. Fluorescence microscopy was performed on a Zeiss AxioObserver equipped with an ORCA‐Flash4.0 V2 Digital CMOS camera (Hamamatsu Photonics) and ZEN Blue software. Images were acquired through a ×100 phase-contrast objective and analyzed by ImageJ/Fiji (v 2.1.0/1.53c).
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8

Epifluorescence Microscopy of Immobilized Samples

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Samples were immobilized by poly-L-lysine-coated slides. Epifluorescence microscopy was performed on a Zeiss Axio Observer equipped with a Hamamatsu Orca-Flash 4.0 V3 Digital CMOS camera, Colibri 7, and an oil-immersion phase-contrast objective Plan Apochromat 100x/1.45 N.A. (Nikon). Phase contrast and epifluorescence exposures were 100 ms and 500 ms, respectively.
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9

Live-Cell Imaging of CAR T-Cell Cytotoxicity

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The nanowell manufacture and testing were described previously [40 (link)–42 (link)]. CAR T-cells and targets were labeled with fluorescent dyes, loaded onto arrays, incubated in media + Annexin V (Invitrogen, Carlsbad, CA), and monitored using a Carl Zeiss Axio Observer (Dublin, CA) fitted with a Hamamatsu (Bridgewater, NJ) Orca-Flash sCMOS camera using a 20 × 0.8 NA objective for 6 h at 5-min intervals. Images were collected and processed for ≥500 wells using an in-house algorithm for cell tracking and segmentation [43 (link)].
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