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4 protocols using pe texas red

1

Profiling PD-1 and LAG-3 expression on T cells

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CD4 and CD8 T cells from the peripheral blood lymphocytes (PBLs), draining lymph nodes, and TILs were stained for PD-1 (APC conjugate; BD Biosciences) and lymphocyte-activation gene 3 (LAG-3; FITC; Lifespan Biosciences, Seattle, WA) expression. The cells were also co-stained with CD4 or CD8 (PE or PE-Texas Red, PerCP-Cy5.5, respectively, BD Biosciences) for these analyses. For sorting, peripheral blood mononuclear cells were stained with CD3 (AF-700; BD Biosciences) and PD-1 (APC; BD Biosciences), and CD3+ cells were sorted based on PD-1 expression using the FACSAria (BD Biosciences). Sorted cells were stimulated in a 96-well plate for 3 hours at 37°C with PMA (20 ng/mL) and ionomycin (1 μg/mL) in the presence of Golgi-stop (BD Biosciences). Cells were then stained for CD4 (PE-Texas Red; BD Biosciences), CD8 (PerCP-Cy5.5; BD Biosciences), and intracellular IFN-γ (FITC; BD Biosciences) using the BD Cytofix/Cytoperm kit, in accord with the manufacturer’s recommended protocol. Flow cytometry was conducted using a FACSCalibur (BD Biosciences) or LSR II (BD Biosciences) and data were analyzed using FlowJo software (Tree Star, San Carlos, CA).
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2

Comprehensive Immune Profiling of PBMCs and TILs

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A fraction of enriched PBMCs and enriched TIL were plated in a 96 well U-bottom plate. The samples were washed with 1X PBS and underwent staining with Fixable Viability Dye (eFluor 780 Thermo Fisher Scientific, Cat # 65-0865-14), followed by fluorophore conjugated antibodies specific for human CD45RO (BV570 Biolegend, Cat # 304226), CD8 (BV650 Biolegend, Cat # 301041), LAG-3 (FITC BMS), TIM-3 (PE Biolegend, Cat # 345005), CD4 (PE-Texas Red BD Biosciences, Cat # 562316), CD45RA (PerCP-Cy5.5 Biolegend, Cat # 304122), PD-1 (PE-Cy7 BD Biosciences, Cat # 561272) and CD3 (AF700 BD Biosciences, Cat # 557943). The samples then underwent fixation and permeabilization (eBioscience, Cat # 88-8824-00), after which they stained by fluorophore conjugated antibodies specific for human FoxP3 (Pac Blue BD Biosciences, Cat # 560460) and CTLA-4 (APC BD Biosciences, Cat # 560938). Manufacturer specified isotype control antibodies were used to determine positive signal and gating strategies. Data were analyzed using FlowJo Software (Tree Star, Mac version 9.9.4).
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Multiparametric Flow Cytometric Analysis

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Fresh total cells from spleens were isolated in PBS1×-3% fetal bovine serum (FBS) and stained for 20 min at 4°C with the following monoclonal antibodies at predetermined optimal dilutions: CD121b-BV421, CD19-PeCF594, CD4-V500, CD8a-AF700, Bcl6-APC, CXCR5-Biotin, GL7-e450, CD95 PE, Foxp3-AF488, PD-1-PE (BD Biosciences) or PE-Texas Red (PETR), streptavidin-APC or streptavidin-APC-Cy7 (BD Biosciences), GITR PETR (Miltenyi). CXCR5 staining was performed using biotinylated anti-CXCR5 for 30 min at 20°C followed by APC-or APC-Cy7-labeled streptavidin at 4°C. Intracellular detection of Foxp3 was performed on fixed and permeabilized cells using appropriate buffer (eBioscience), following the manufacturer's recommendations. Stained cells were run on CytoFLEX S cytometer (Beckman -Coulter) and analyzed using FlowJo software (TreeStar Inc.). Dead cells were excluded by forward/side scatter gating.
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4

Multiparameter Flow Cytometry Analysis of Immune Cells

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Lymph nodes (LN) or tumors were digested using DNase I and Liberase TL (Roche). Single cell preparations were resuspended in Flow buffer (PBS with 10mM EDTA, 2% FBS and 0.01% NaN3) and pretreated with anti-mouse CD16/32 (2.4G2) before staining with antibodies specific for the following markers: CD45 (30F11), CD45.1 (A20), CD4 (RM4–5), CD3ϵ (2C11), CD8α (53–6.7), CD25 (PC61), CD69 (H1.2F3), Vα2 (B20.1) (all BD Biosciences), PD-1 (RMP1–30) from Biolegend and CD4 (GK1.5) prepared in-house. Streptavidin-PE or PE-Texas-Red (BD Biosciences) were used to reveal biotinylated antibodies. Dead cells were identified by DAPI or Live/Dead Fixable blue (Invitrogen) exclusion. For intracellular cytokine staining, cell suspensions were incubated for 6 h in Golgi Stop without restimulation. Cells were then stained for surface markers, followed by intracellular staining with anti-IFNγ (XMG1.2) and anti-TNF-α (MP6-XT22) antibodies, or isotype controls (R3–34 or EBRG1), using the BD Cytofix/Cytoperm kit (all from BD Biosciences). Acquisition was performed on a BD LSRII SORP (Becton Dickinson) and data were analyzed using FlowJo version 9.7.4 (Tree Star).
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