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5 protocols using nf κb

1

Multicolor Flow Cytometry Analysis

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PE-conjugated anti-chicken IgA (Cat No.8330–09, SouthernBiotech, Birmingham, AL, USA), AF647-conjugated anti-chicken IgM (Cat No.8310–31, SouthernBiotech), NF-κB (Cat No.bs-0465R, Bioss, Beijing, China), PE-conjugated anti-chicken MHC II (Cat No.8345–09, SouthernBiotech), β-actin (Cat No.AC026, Abclonal), P70S6K1 (Cat No.A2190, Abclonal), phospho-P70S6K1 T389 (Cat No.AP1059, Abclonal), Goat anti-rabbit IgG (H + L) Alexa Fluor 594 (Cat No.A11012, Invitrogen), GW9662 (Cat No.HY-16578, MCE, Shanghai, China), S3I-201 (Cat No.SD4794, Beyotime Biotechnology, Shanghai, China).
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2

Western Blot Analysis of Signaling Proteins

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Cell lysates were separated by 10% SDS-PAGE and transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore). The membranes were blocked in 5% BSA for 1 h, then incubated with primary antibodies overnight at 4 °C. Antibodies were used as following: ERCC6L (Proteintech, 15,688–1-AP, 1:1000), PI3K (Bioss, bs-0128R, 1:1000), p-PI3K (Ser1070; Bioss, bs-6417R, 1:1000),AKT1 (Bioss, bs-0115R, 1:1000), p-AKT1 (Thr34; Bioss, bs-5194R, 1:1000), JAK2 (Bioss, bs-23003R, 1:1000), p-JAK2 (Tyr1007 + Tyr1008; Bioss, 2485R, 1:1000), NF-κB (Bioss, bs-0465R, 1:1000), p-NK-κB (Thr505; Bioss, bs-5663R, 1:1000), and β-actin (Bioss, bs-0061R, 1:5000). The next day membranes were incubated with HRP-conjugated secondary antibodies for 1 h at 37 °C. After washed for 3 times in TBST for 5 min, membranes were visualized by chemiluminescence kit and scanned with QuantityOne software (Bio-Rad, Hercules, CA, USA). The bands were analyzed with ImageJ (NIH, Bethesda, MA, USA).
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3

Western Blot Profiling of UPR Proteins

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Total protein was extracted by lysis buffer for Western blotting with 100 mM of phenylmethanesulfonylfluoride, and 25 μg of total protein sample was subjected to SDS-polyacrylamide gel electrophoresis under reducing conditions. Separated proteins were transferred to nitrocellulose membranes in Tris-glycine buffer containing 20% methanol at 4 °C. The membranes were blocked with 5% skim milk for 2 h, following incubated overnight with diluted primary antibodies against Bcl-xl (1:5000, Abcam, Cambridge, UK), caspase 3 (1:2000, Cell signaling technology, Boston, MA, USA), Bip (1:2000, Cell signaling technology), PERK (1:5000, Abcam), p-PERK (1:1000, Bioss), ATF4 (1:2000, Proteintech, Chicago, IL, USA), ATF6 (1:2000, Proteintech), eIf2α (1:1000, Proteintech, Wuhan, China), p-IRE1(1:1000, Bioss), CHOP (1:1000, Bioss), NF-κB (1:1000, Bioss), IκB (1:2000, Cell signaling technology), ZO-1 (1:1000, Bioss, Beijing, China), Occludin (1:1000, Bioss), Claudin-1 (1:1000, Bioss), and GAPDH (1:1000, Proteintech, China) followed by goat anti-rabbit IgG (H+L; 1:1000, Proteintech, China). The gray values of protein bands were measured by ImageJ software version 6.1 (Bio-Rad Laboratories, Hercules, CA, USA). The cellular protein PERK was used as an internal control for p-PERK, and GAPDH was used as an internal control for other proteins.
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4

Investigating Inflammatory Pathways in Cellular Assays

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L-NAT was obtained from Sigma Aldrich (St. Louis, MO., USA). Rat ELISA kit was purchased from NeoBioscience (Shanghai, China). The cell counting kit-8 (CCK-8) came from 7sea-Biotech (Shanghai, China). Anti-ASC, NLRP3, IL-1β, TLR4 and NF-κB were purchased from Bioss Antibodies (Beijing, China). Anti-Caspase 1 antibody came from Santa Cruz Biotechnology (Shanghai, China). TRIzol reagent was obtained from Life Technologies (USA). RTPA lysis was purchased from SolarBio Life Sciences (Beijing, China).
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5

Protein Expression Analysis in Ischemic Brain

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Twenty-four hours after the reperfusion, the peri-infarct brain tissues were collected and homogenized in RIPA buffer (Beyotime, China) and then denatured. The nuclear or cytoplasmic protein was extracted by Nuclear and Cytoplasmic Protein Extraction Kit (Beyotime, China) according to the manufacture's instructions. The concentrations of total, cytosolic and nuclear proteins were determined by a BCA Protein Assay Kit (Beyotime). Subsequently, protein samples were separated on SDS-PAGE and then transferred to polyvinylidene difluoride membranes (Millipore, USA). Then the membranes were blocked with 5% skimmed milk for 1 h at room temperature and incubated with primary antibodies against IRAK1 (1:400, BOSTER, China), phospho-NF-κB inhibitor α (p-IκBα) (1:500, Bioss, China), IκBα (1:500, Bioss, China), NF-κB (1:500, Bioss, China), β-actin (1:500, Bioss, China), and Histone H3 (1:500, Bioss, China) at 4°C overnight, respectively. The secondary antibodies were added to the membranes at 37°C for 45 min. The enhanced chemiluminescence (ECL, Beyotime, China) was used to visualize the bands.
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