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8 protocols using analytical grade ammonium acetate

1

Analytical Standards and Sample Preparation

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Analytical standards of ciprofloxacin, enrofloxacin, nalidixic acid, metronidazole and cefuroxime (purity of all >98%) were purchased from Sigma-Aldrich (St. Louis, MO, USA) (Table 1). Analytical grade acetonitrile, methanol, acetone, ethyl acetate and hydrochloric acid were purchased from Chempur (Piekary Śląskie, Poland). Analytical grade acetic acid was purchased from POCH S.A (Gliwice, Poland). Analytical grade ammonium acetate and citrate buffer (pH = 2, pH = 3, pH = 4, pH = 5, pH = 6) were purchased from Merck (Darmstadt, Germany). Hypergrade water, methanol, acetonitrile and formic acid were purchased from Merck (Darmstadt, Germany).
Oasis HLB cartridges (500 mg, 6 mL) from Waters (Eschborn, Germany) were used for solid-phase extraction (SPE). Nylon syringe filters (0.45 µm, 25 mm, PURELAND) were used to filter the sample. Plant material samples (parsley root) were purchased from stores in the Silesian Voivodship (administrative unit) in Poland. Soil samples were collected in Gliwice, Poland.
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2

Analytical Standards for Commonly Used Chemicals

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Triclosan (TCS), bisphenol A (BPA), and benzophenone-3 (BP-3) standards were all purchased from Sigma-Aldrich (St. Louis, MO, USA). HPLC-grade methanol and water, analytical-grade ammonium acetate, formic acid, andβ-Glucuronidase/arylsulfatase were provided by Merck (Darmstadt, Germany). 13C12-triclosan was obtained from Cambridge Isotope Laboratories Inc. (Andover, MA, USA).
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3

HPLC Analysis of Ascaroside Standards

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Analytical-grade ammonium acetate and formic acid were obtained from Sigma-Aldrich Chemical (St. Louis, MO, USA). Methanol, HPLC-grade water, and acetonitrile were supplied by Burdick & Jackson (Muskegon, MI, USA). Chemically synthesized ascr#1, 2, and 3, which were used as standards for the generation of calibration curves and as quality control (QC) samples, were prepared as previously described52 (link),58 (link).
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4

Quantitative Analysis of Cortisol and Cortisone

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Standards of cortisol (98%) and cortisone (98%) were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Deuterated cortisol (cortisol-9, 11, 12, 12-d4, 98%) as an internal standard (IS) was purchased from Cambridge Isotope Laboratories, Inc. (MA, USA). Analytical-grade ammonium acetate (≥98%) and ethyl acetate (99.8%) and activated charcoal were purchased from Sigma. Gibco fetal bovine serum (FBS) was purchased from Life Technologies (CA, USA). HPLC-grade methanol and water were purchased from Fisher Scientific Korea Ltd. (Seoul, Republic of Korea). All solvents were filtered through Advantec membranes with 0.45 μm pore size (Toyo Roshi Kaisha, Ltd., Tokyo, Japan).
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5

Mass Spectrometry Reagents Procurement

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LC-MS grade water, methanol and acetonitrile, HPLC-grade chloroform, and analytical-grade ammonium acetate and sodium chloride were all purchased from Sigma-Aldrich (Milan, Italy).
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6

Planting and Characterization of Isatis Species

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In June 2018, the following Isatis species were planted on our behalf by the private company (Zealquest, Shanghai, China): Isatis indigotica Fort. (ind), Isatis buschiana (bus), Isatis cappadocica (cap), Isatis cappadocica subsp. Steveniana (capS), Isatis costata C. A. Mey. (cosC), Isatis tinctoria L.(tin), Isatis tinctoria L. var. tinctoria (tinV), Isatis japonica Miq. (jap), Isatis lusitanicaL. (lus), Isatis glauca Aucherex Boiss. (glaA), Tetraploid Isatis indigotica Fort. (4n = 28), (4ind), Isatis oblongata DC. (obl), Isatis violascens Bunge. (vio), and Isatis minima Bunge. (min). Information regarding the source of the seeds (14 species) is shown in Table S2. Leaves of these 14 species were harvested four months after planting. All voucher specimens were deposited in the Institute of Chinese Materia Medica, Shanghai University of Traditional Chinese Medicine (SHUTCM, Shanghai, China). The phenotypes of 14 species are presented in Figure S1.
Pure distilled water used for LC-MS analysis was purchased from Watsons Water (Watsons, Hong Kong, China). HPLC-grade methanol, acetonitrile, and formic acid were purchased from Fisher Scientific (Thermo, Waltham, MA, USA). Warfarin and analytical-grade ammonium acetate were obtained from Sigma-Aldrich (Sigma-Aldrich, Darmstadt, Germany).
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7

Busulfan Quantification in Plasma

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Busulfan, Busulfan-d8, analytical grade ammonium acetate, and bilirubin were purchased from Sigma-Aldrich (St. Louis, MO, USA). Busulfan-d8 was supplied at a concentration of 100 μg/mL in methanol. Ultra LC/MS grade acetonitrile (ACN) was purchased from Honeywell (Charlotte, NC, USA). Ultra LC/MS grade methanol was purchased from Fisher Scientific (Waltham, Massachusetts, USA). Analytical grade formic acid was purchased from PanReac AppliChem (Barcelona, Spain). Intralipid® was provided by Fresenius Kabi España (Barcelona, Spain). Plasma and hemolyzed plasma were collected from patients not treated with Busulfan.
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8

Comprehensive PFAS Analysis Protocol

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All reagents used for sample preparation and the mobile phases were of analytical or LC-MS grade. Ultra-pure water (18.2 MΩ cm) was obtained from a Sartorius 611 arium® pro water generation system (Sartorius Lab Instruments GmbH & Co. KG, Goettingen, Germany). LC-MS grade LiChrosolv® methanol and analytical grade ammonium acetate were obtained from Sigma-Aldrich (St Louis, MO, U.S.).
An analytical standard (2 mg L -1 ) containing 24 PFAS with carbon chain lengths of C4-C13 perfluroalkylcarboxylic acids, C4-C10 perfluroalkylsulfonates, FOSA, N-MeFOSAA, N-EtFOSAA perflurooctanesulfon-(amide & amidoacetic acids) as well as 4:2, 6:2 and 8:2 fluorinated telomer acids was purchased from Wellington Laboratories (Guelph, Ontario, Canada). Sodium hydroxide, sodium chloride, ammonium hydroxide were purchased from Sigma-Aldrich (Castle Hill, Australia) and glacial acetic acid from Chem-Supply (Gillman, Australia). PTFE free sample tubes and vials made of polypropylene were used to avoid contamination [30] .
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