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5 protocols using ab105400

1

Western Blot Analysis of Protein Expression

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The treated cells were collected and washed twice with PBS buffer. Cells were then lysed by RIPA lysis buffer (Beyotime Biotechnology, Shanghai, China) for total protein extraction. The BCA protein assay kit (Beyotime Biotechnology) was applied for determining protein concentration. Protein with equivalent amounts were subsequently separated by SDS/PAGE and then transferred on to a PVDF membrane. After blocking, the membranes were incubated with primary antibodies against CXXC4 (ab105400, 1:500), BCL-2 (ab32124, 1:1000), Bax (ab32503, 1:1000), and β-actin (ab8227, 1:3000) (Abcam, Cambridge, U.K.) overnight at 4°C. After that, the membranes were incubated with secondary antibody (ab205718) (Abcam) and exposed using an Ultrasensitive ECL Chemiluminescence kit (Sangon Biotech) according to the manual.
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2

Protein Expression Analysis in GC Tissues

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GC tissues or cells were collected, and the total protein was extracted by radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime Biotechnology, Shanghai, China). The protein concentration was determined using a bicinchoninic acid (BCA) kit (20201ES76, Yeasen Biotechnology, Shanghai, China). Quantification was performed according to different concentrations. Following separation with the use of polyacrylamide gel electrophoresis, the protein was transferred onto a polyvinylidene fluoride membrane (IPVH85R, Millipore, Darmstadt, Germany), which was then blocked with 5% bovine serum albumin (BSA) for 1 h at room temperature. Next, the membrane was incubated with primary rabbit antibodies (Abcam, Cambridge, UK) to CXXC4 (ab105400, 1:100), ERK (ab184699, 1:10,000), phosphorylated ERK (ab79483, 1:1,000), PD-L1 (ab233482, 1:100), and GAPDH (ab128915, 1:10,000) overnight at 4°C. The following day, the membrane was cultured with horseradish peroxidase (HRP)-labeled goat anti-rabbit immunoglobulin G (IgG) (ab205718, 1:20,000, Abcam, Cambridge, UK) for 1 h at room temperature. The membrane was visualized using the developing solution. Protein quantitative analysis was conducted using ImageJ 1.48u software (National Institutes of Health) and expressed as the gray value ratio of each protein to the internal reference GAPDH.
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3

Immunohistochemical Analysis of EZH2, CXXC4, and β-Catenin

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Paraffin-embedded GAC tissues were cut into 5 μm-thick serial sections. Following dehydration, the sections were treated with 3% hydrogen peroxide for 10 min and blocked with normal goat serum for 10 min. Next, immunostaining was performed with primary antibodies: rabbit anti-EZH2 (1:50, #5246, Cell Signaling Technologies [CST], Beverly, MA), rabbit anti-CXXC4 (1:200, ab105400, Abcam Inc., Cambridge, UK), mouse anti-β-catenin (1:1000, 51067-2-AP, Proteintech, Wuhan, Hubei, China) overnight at 4 °C. Biotin-labeled goat anti-mouse or goat anti-rabbit (1:200, BA1001/BA1003, Boster, Wuhan, Hubei, China) served as secondary antibody. Thereafter, the sections were treated with SP solution, developed with DAB, and counterstained with hematoxylin before observation under a microscope. The primary antibody was substituted with IgG as negative control (NC).
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4

Western Blot Analysis of Protein Expression

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Cells were lysed and boiled for 10 min in sample buffer (2% SDS, 10% glycerol, 10% β-Mercaptoethanol, Bromphenol Blue and Tris-HCl, pH 6.8). Equal amounts of protein (50–100 μg) from cell lysate were denatured in sample buffer (Thermo Fisher Scientific), subjected to SDS-polyacrylamide gel electrophoresis, and transferred to nitrocellulose membranes (Bio-Rad). The membranes were immunoblotted with specific primary antibodies, horseradish peroxidase-conjugated secondary antibodies, and visualized by SuperSignal West Pico Stable Peroxide Solution (Thermo Fisher Scientific). Primary antibodies were against AR (dilution 1:1000; #sc-816, Santa Cruz Biotechnology), CXXC5 (dilution 1:1000; #16513-1-AP, Proteintech), CXXC4 (dilution 1:500; #ab105400, Abcam), TET2 (dilution 1:1000; #MABE462, Millipore), TET3 (dilution 1:1000; #ab139311, Abcam), TET1 (dilution 1:1000; #ab191698, Abcam), ID3 (dilution 1:500, #sc-56712, Santa Cruz Biotechnology), PFN2 (dilution 1:1000; #sc-100955, Santa Cruz Biotechnology), BRD4 (dilution 1:1000; #ab128874, Abcam), p300 (dilution 1:1000; #MS-586-PO, Thermo Scientific), ID1 (dilution 1:1000; #ab66495, Abcam), FOXA1 (dilution 1:1000; #ab23738, Abcam), Flag (dilution 1:1000; #F1804, Sigma Aldrich) and V5 (dilution 1:1000; #A190-120A, Bethyl Laboratories) and ERK2 (dilution 1:2000; #sc-1647, Santa Cruz Biotechnology).
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5

Western Blot Analysis of Protein Extraction

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Total protein extraction from GAC tissues and cells was conducted with radioimmunoprecipitation assay lysis buffer (Beyotime, Shanghai, China) supplemented with 1% phenylmethylsulphonyl fluoride. After concentration determination by a bicinchoninic acid (BCA) kit (Pierce Biotechnology Inc., Rockford, IL), 50 μg protein was separated by electrophoresis and then transferred onto polyvinylidene fluoride membranes. The membrane was blocked using 5% skimmed milk powder for 1 h, followed by overnight incubation at 4 °C with primary antibodies: rabbit anti-EZH2 (1:1000, #5246, CST), rabbit anti-CXXC4 (1:500, ab105400, Abcam), mouse anti-β-catenin (1:5000, 51067-2-AP, Proteintech), rabbit anti-GSK-3β (1:1000, #12456, CST), rabbit anti-phosphorylated (p-)GSK-3β (Ser9, 1:1000, #5558, CST), mouse anti-β-actin (1:10000, AC004, ABclonal, China), with β-actin serving as the loading control. The next day, the membrane was incubated with horseradish peroxidase-labeled goat anti-mouse/rabbit IgG (1:10000, BA1056, Boster, Wuhan, Hubei, China) for 1 h. The immunocomplexes were visualized using enhanced chemiluminescence reagent (Thermo Fisher Scientific) and band intensities were quantified using Image J software [36] (link). The detailed experimental reagents and instruments are listed in Supplementary Table 2.
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