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3 protocols using irdye800cw conjugated streptavidin

1

Efficient Gene Editing via TALEN and CRISPR

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293T, HepG2,
and PANC1 cells cultivated in the 24-well plates were cotransfected
with 400 ng of TALEN vectors (200 ng left TALEN and 200 ng right TALEN)
and 400 ng of homology arm donor. 293T, HepG2, and PANC1 cells cultivated
in the 24-well plates were cotransfected with 400 ng of sgRNA-CRISPR/Cas9
and 400 ng of homology arm donor. The cells were cultured for an additional
24 h. When the donor AviTag-IRES2-displayAviTag was used, the cells
were cotransfected with an additional 100 ng pMy-BirA (Addgene).
One microliter of the IRDye800CW-conjugated streptavidin (1 mg/mL
stock; Li-COR Bioscience) was added to the cells in the wells and
cultivated for 4 h. The cells were rinsed with PBS and imaged using
the Odyssey Infrared Imaging System (Li-COR Bioscience) at the channel
of NIRF 800 nm. One microliter of the Alexa Fluor 488-conjugated Streptavidin
(0.9 mg/mL stock; YEASEN, China) was added to the cells in wells and
cultivated overnight. The cells were rinsed with PBS and photographed
using a fluorescence microscope, IX51 with DP71 (Olympus), and quantitatively
analyzed using a flow cytometer, Calibur (BD). At this point, the
efficiency of gene editing was also determined by estimating the fraction
of the fluorescent cells using a fluorescence microscope and ImageJ
counting.
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2

Western Blot of Extracellular Vesicles

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Samples were supplemented with Laemmli sample buffer (Bio-Rad Laboratories) containing 50 mm DTT and incubated at 90 °C for 10 min. Reduction and heat denaturation were omitted for EV samples as well as urea-containing samples. Proteins were then resolved using 4–20% Mini-PROTEAN TGX gradient gels (Bio-Rad Laboratories) and transferred to a nitrocellulose membrane (Bio-Rad Laboratories). Blots were detected using IRDye 800CW conjugated streptavidin (Li-Cor 926-32230) according to the manufacturer's recommendations and detected using the Odyssey system. Staining for total protein load was performed with Ponceau-S.
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3

Western Blot Analysis of Key Proteins

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Cells were lysed with sample loading buffer (2% w/v sodium dodecyl sulfate (SDS), 62.5 mM Tris-HCl, 10% v/v glycerol, 2.5% v/v 2-mercaptoethanol, 0.005% w/v bromophenol blue) to obtain total cell lysate samples, which were separated by SDS-PAGE using ClearPAGE 4–20% polyacrylamide gradient gels (Expedeon) and transferred onto an Immobilon-FL PVDF membrane (EMD Millipore). Membranes were then blocked with Odyssey Blocking Buffer (Li-Cor) before incubation with primary antibodies for 1 hour at room temperature and subsequent incubation with IRDyes-conjugated secondary antibodies (Li-Cor) for 1 hour at room temperature. Mouse anti-GAPDH (clone GAPDH-71.1) and rabbit anti-GAPDH (G9545) were from Sigma-Aldrich. IRDye 800CW-conjugated streptavidin was from Li-Cor, while the anti-Lck (clone L22B1), anti-p44/42 MAPK (Erk1/2, clone 3A7), and anti-phospho-p44/42 MAPK (Erk1/2, Thr202/Tyr204, clone D13.14.4E) antibodies were from Cell Signaling Technologies. Blots were visualized using the Odyssey CLx Imaging System and quantified using ImageStudio software (Li-Cor).
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