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3 protocols using biotek synergy h1 hybrid multi mode reader

1

Total RNA Extraction and cDNA Synthesis

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Total RNA was isolated from the floral tissue using Qiagen RNeasy Plant kits following the manufacturer’s instruction (QIAGEN, Valencia, CA, USA). Genomic DNA contamination was removed by on-column DNase I digestion (Qiagen Inc., Valencia, CA, USA). The concentration and RNA purity was assessed based on an absorbance ratio of 1.8 to 2.0 at 260/280 nm and ≥ 2.0 at 260/230 using the Biotek Synergy H1 Hybrid Multi-Mode Reader (BioTek Instruments Inc., Winooski, VT, USA). DNA-free total RNA (1 µg) was used for the cDNA synthesis using MultiScribe™ Reverse Transcriptase from the High-Capacity cDNA Reverse Transcription Kit (Applied Biosystems, CA, USA) in a 20 µL reaction following the manufacturer’s instruction. The MultiScribe™ reaction mix includes random primers to make cDNAs. The final cDNA products were diluted 20-fold before use in real-time PCR.
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2

Measuring Cell Proliferation with GMCSF-A192

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TF-1 cells (American Type Culture Collection, VA, USA) were purchased
and cultured with the final concentration of 5 ng/ml recombinant hGMCSF
(G5035–5UG, Sigma-Aldrich, MO). To measure cell proliferation, TF-1 cells
were treated with either A192, rhGMCSF, or hGMCSF-A192 with different
concentrations. The concentrations of hGMCSF-A192 were: 47, 9.3, 1.9, 0.37,
0.075, 0.015, 0.0030, 0.00060, 0.00012, and 2.4×10−5nM. The concentrations of rhGMCSF were: 34, 6.8, 1.4, 0.27, 0.054, 0.011,
0.0022, 0.00044, 8.7×10−5, and
1.7×10−5 nM. The concentrations of A192 were: 41,
8.3, 1.7, 0.33, 0.066, 0.013, 0.0027, 0.00053, 0.00011,
2.1×10−5 nM. The cells were incubated in a 96-well
plate at 37 °C for 72 hours, and Cell Proliferation Reagent WST-1
(5015944001, Sigma-Aldrich, MO) was added to the cells followed by additional 2
hours of incubation. An absorbance value of each well on the 96-well plate was
measured with Biotek Synergy H1 Hybrid Multi-Mode Reader (Biotek, VT, USA) at
450 nm and 690 nm, and the absorbance at 690 nm was subtracted from the
absorbance at 450 nm to measure the biological activity of proteins at each
concentration. The graph was fit to the following equation: OD450OD690=Baseline+Cprotein×PlateauBaselineEC50+Cprotein
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3

Evaluating Combination Drug Treatments on AML Cell Lines

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Both cell lines were cultured in vitro to assess drug treatment, by plating the OCI/AML3 (DSMZ–Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH–German Collection of Microorganisms and Cell Cultures) and THP1 (ATCC–American Type Culture Collection) cells in 96‐well plates, at 104 cells/200 µL/well in 2 types of media: 80% alpha‐MEM (Invitrogen) with 20% foetal bovine serum (FBS) (Invitrogen) for OCI/AML3 or RPMI1640 (Invitrogen) with 10% FBS, 2 mM L‐glutamine for THP1, and then treating them for 48 hour with 37.5 µM olaparib (Selleckchem), 100 µM cytarabine (Sigma‐Aldrich), 1.4 µM daunorubicin (Sigma‐Aldrich) and 10 µM azacytidine (Sigma‐Aldrich), either alone or in combination. Cells were cultured in an incubator at 37°C and 5% CO2, as previously described.24 (link), 25 (link), 26 (link) Cell proliferation was evaluated by using the CellTiter 96® AQueous Non‐Radioactive Cell Proliferation Assay (Promega) and analysed with BioTek Synergy H1 Hybrid Multi‐Mode Reader (BioTek Instruments). All reagents and compounds were purchased from Invitrogen and had a 99.9% purity. The in vitro experiments were carried out after the approval of the Ethics Committee of the Iuliu Hatieganu University of Medicine and Pharmacy in Cluj Napoca.
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