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3 protocols using granzyme b fitc clone gb11

1

Multiparametric Flow Cytometry Immunophenotyping

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The following anti-human monoclonal antibodies (mAb) were used for staining: PD-1-APC (eBioscience, San Diego, CA, USA), CD3-PerCP-Cy5.5, CTLA-4-PE, PD-1-PerCP Cy5.5 (all Biolegend, San Diego, CA, USA), CCR7-FITC (R&D Systems Inc, Minneapolis, MN, USA) CD3-Alexa Fluor 405, CD4-PE-Texas Red, CD-8-PE-TR, CD45RA-PE-TR (all Life Technologies, Grand Island, NY, USA), CD3-APC-Cy7, CD8-APC, CD8-PE-Cy7 (all BD Biosciences, San Jose, CA, USA), granzyme B FITC (clone GB11, Biolegend) including their respective isotypes, which served as negative controls for surface as well as intracellular staining. Antibodies were pre-titrated using activated as well as non-activated PBMC to determine optimal staining dilutions. Viability was assessed by Zombie aqua (Biolegend)
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2

Flow Cytometry Analysis of NK Cells and Carcinoma Lines

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Analysis of the expression of cell surface and intracellular proteins in purified NK cells and in human carcinoma cell lines was performed by flow cytometry. Cells (1.0 × 106 (link)) were incubated with 1 μL per test of LIVE/DEAD Fixable Aqua (Thermo Fisher Scientific, Waltham, MA) in 1 × phosphate buffered saline (PBS) for 30 min at 4°C to accomplish live versus dead cell discrimination. Cells were then centrifuged, washed twice with cold PBS, and then stained with primary antihuman mAbs in 1 × PBS +1% BSA (Teknova, Hollister, CA) for 30 min at 4°C. Binding of NEO-201 to human carcinoma cell lines was detected by Pacific Blue-conjugated NEO-201 antibody (BioLegend, San Diego, CA). To detect the NK markers modulated by ALT-803, purified NK cells were labeled with following antibodies: CD56-PE (clone 5.1H11), CD16-PerCP-Cy5.5 (clone 3G8), Tim-3-PE-Cy7 (clone F38–2E2), NKG2D-BV421 (clone 1D11), CD107a-APC-Cy7 (clone H4A3), Granzyme B-FITC (clone GB11), PD-1-APC (clone EH12.2H7), and CD158d-APC (clone mAb 33) (BioLegend). After staining, cells were washed twice with cold PBS and examined using a FACSVerse flow cytometer (BD Biosciences, San Jose, CA). Analysis of cellular fluorescence was performed using BD FACSuite software (BD Biosciences). Positivity was determined by using fluorescence-minus-one controls.
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3

Comprehensive SARS-CoV-2 PBMC Profiling

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After stimulation with SARS-CoV-2 OPP, PBMCs were stained with fluorophore conjugated antibodies for flow cytometry analysis. Mastermixes, containing all antibodies for intra or extracellular staining in the optimal concentrations were prepared directly before staining. At first, cells were surface stained with CCR7-PerCP-Cy5.5 (clone G043H7) (BioLegend), CD4-A700 (clone OKT4) (BioLegend), Fixable Viability Dye eFluor780 (eBioscience), CD8-V500 (clone RPA-T8) (BD Biosciences) and CD45RA-BV605 (clone HI100) (BioLegend) for 10 minutes at room temperature in the dark. After thoroughly washing with PBS/BSA, cells were fixed and permeabilized using Intracellular Fixation & Permeabilization Buffer Set according to the manufacturer’s instructions (Thermo Fisher Scientific). Then, the cells were stained with Granzyme B-FITC (clone GB11) (BioLegend), IL2-PE (clone MQ1-17H12) (BioLegend), IL4-PE-Dazzle594 (clone MP4-25D2) (BioLegend), CD137 (4-1BB)-PE-Cy7 (clone 4B4-1) (BioLegend), CD154 (CD40L)-A647; (clone 24-31) (BioLegend), TNFa-eFluor450 (clone MAb11) (eBioscience), IFNg-BV650 (clone 4S.B3) (BioLegend), CD3-BV785 (clone OKT3) (BioLegend) for 30 minutes at room temperature in the dark. All samples were washed thoroughly with PBS and acquired on a CytoFlex flow cytometer (Beckman Coulter).
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