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407 protocols using bodipy 581 591 c11

1

Multimodal Fluorescent Imaging of Cellular Stress

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BODIPY493/503 staining was performed as previously described [21 (link)]. For dihydroethidium (DHE) staining, live cells were incubated with 0.5 mg/mL DHE (#D11347, Invitrogen, Life Technologies Corporation, Carlsbad, CA, USA) in PBS for 30 min at 37 °C, washed in PBS and fixed in 3.5% PFA for 10 min, and washed and counterstained with Hoechst 33342 (#B2261, Sigma-Aldrich, St. Louis, MO, USA) for 10 min.
For the BODIPY581/591 C11 lipid peroxidation assay, live cells were incubated with or without 2 μM BODIPY581/591 C11 (#D3861, Invitrogen, Life Technologies Corporation, Carlsbad, CA, USA) for the last 30 min, washed with PBS, and live imaged in PBS using a Zeiss LSM 880 microscope. Images were obtained in both the green and red channels. Relative lipid peroxidation was determined by the ratio of green fluorescence intensity to red fluorescence intensity in background-subtracted images using Image J software (NIH, Bethesda, MD, USA).
Apoptosis cells was assessed by staining cells with Annexin V/PI (AV/PI) at 37 °C for 30 min. The cells were then washed with PBS and resuspended in cold PBS containing 1% FBS and analysed by flow cytometry (Guava EasyCyte Plus System, Millipore, Billerica, MA, USA).
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2

Evaluating Lipid Peroxidation in Cancer Cells

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Example 4

Imaging assay: human cancer cells are seeded at 5,000 cells per well in a CellCarrier Ultra 96-well plate (Perkin-Elmer) in 150 μl of RPMI medium with 10% FBS. Cells are incubated for 24 h at 37° C. and then treated with the indicated compounds or DMSO (90 min, 37° C.). During the last 30 min of incubation, 60 nM DRAQ7 (Abcam), 1 μg ml−1 Hoechst 33342 (ThermoFisher) and 1μM BODIPY 581/591 C11 (ThermoFisher) dyes are added. Cells are imaged using an Opera Phenix High-Content Screening System (Perkin-Elmer) equipped with 405, 488, 560 and 647 nm lasers. Image analysis is conducted with Harmony High-Content Imaging and Analysis software (Perkin-Elmer).

Use of C11-BODIPY to Show Lipid Peroxidation (Flow Cytometry Assay)

Human cancer cells are seeded at 15,000 cells per well in 96-well plates in RPMI medium with 10% FBS. After 48 h, culture media is replaced with 200μl media containing either DMSO or the indicated inhibitor (10 μM) and 1 μM anti-ferroptosis rescue agent (where indicated). Cultures are incubated at 37° C. for 2 h. Thirty minutes before the end of the incubation period, 10 μM BODIPY 581/591 C11 (Molecular Probes no. C10445) is added to cells. Cells are gathered in 200 μl PBS+0.1% BSA and subjected to flow cytometry analysis (BD FACSCanto II).

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3

Intracellular Staining and Lipid Peroxidation Analysis

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For intracellular staining cells were fixed and permeabilized according to the manufacturer’s instructions using Intracellular Fixation & Permeabilization Buffer Set (BD). To monitor Cytochrome c release, cells were incubated with 20μg/ml digitonin in PBS (Sigma-Aldrich) for 10 minutes on ice before fixation and further staining procedure. For nuclear staining of ATF4, the Foxp3 Fixation/Permeabilization (eBioscience) was used according to the manufacturer’s protocol.
Measurement of cellular lipid peroxidation was performed using BODIPY 581/591 C11 (Thermo Fisher). PT and PS have been treated in 12-well plates with 2μM RSL3 overnight in the presence or absence of 40 μM Deferoxamine mesylate salt (DFO). Cells were collected in Hank’s Balanced Salt Solution (HBSS; Gibco) and incubated with 2 μM BODIPY 581/591 C11 for 20 min at 37 °C. Cells were then washed twice in HBSS and analyzed via FACS.
Data acquirement and analysis was performed in a spectral analyzer (CYTEK Aurora 5-laser and 3-Laser) and data was processed using FlowJo software (Tree Star).
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4

Membrane Lipid Peroxidation Imaging

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Membrane lipid peroxidation was investigated by confocal microscope analysis of the green (ex 485 nm/em 520 nm) and red signal (ex 581 nm/em 591 nm) of the fluorescent probe BODIPY 581/591 C11 (Thermo Fisher Scientific), as previously reported.50 (link) In particular, BODIPY 581/591 C11 shifts its fluorescence from red to green when challenged with oxidizing agents. Briefly, after membrane cholesterol enrichment of SH-SY5Y cells seeded on glass coverslips, the fluorescent probe BODIPY dissolved in 0.1% DMSO was added to the cell culture media (5.0 μM final concentration) for 30 min at 37°C. The cells were fixed in 2.0% buffered paraformaldehyde for 10 min at room temperature and the BODIPY fluorescence was analyzed by the confocal scanning system previously described, using 581 nm excitation wavelength. Treatment with 250 μM H2O2 for 3h was applied as a positive control for membrane lipid peroxidation.
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5

Lipid Peroxidation Measurement by Flow Cytometry

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Lipid peroxidation was measured by flow cytometry with the use of BODIPY 581/591 C11 (Thermo Fisher Scientific). Cells were incubated with drug under normoxic or hypoxic conditions for 18 h. After the addition of BODIPY 581/591 C11 to a final concentration of 5 μM, the cells were incubated for an additional 30 min, isolated by exposure to trypsin, stained for 5 min with PI in DMEM for dead cell exclusion, and then analyzed with an Attune flow cytometer (Thermo Fisher Scientific Inc.) with excitation at 488 nm and a 530/30-nm emission filter to detect oxidized forms of the probe. MFI was calculated with Attune software v2.1.0 (Thermo Fisher Scientific Inc.).
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Lipid Peroxidation Measurement by BODIPY 581/591 C11

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BODIPY 581/591 C11 (Thermo Fisher, Waltham, MA, USA) was dissolved in DMSO at a concentration of 2 mM. After treatment with drugs, the cells were added with BODIPY 581/591 C11 at a final concentration of 2 μM, and then cultured at 37 °C and 5% CO2 for 20 min. After PBS washing, N2A cells were digested into a single cell with trypsin and analyzed by FACS. The detection channel was FITC (BODIPY 581/591C11 excitation light at 488 nm and emission light at 530 nm).
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7

Lipid Peroxidation Assay in ARPE-19 Cells

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The ability of SI to induce lipid peroxidation was investigated using lipid peroxidation sensor BODIPY 581/591 C11 (Thermo Fisher Scientific, Waltham, USA). BODIPY 581/591 C11 is a lipophilic fluorescent dye for indexing lipid peroxidation in cellular membranes55 (link),56 (link). In brief, ARPE-19 cells were seeded in a 96-well plate at density of 8000 cells/well. After 24 h, cells were loaded with 2 μM BODIPY 581/591 C11 for 30 min at 37 °C followed by treatment with or without NaIO3 for 0.5 h or 6 h. As a positive control, cells were treated with 100 μM tBH and 100 nM Heme for 0.5 h or 6 h. Then the rates of lipid peroxidation were measured using a Varioskan Flash multimode reader (Thermo Fisher Scientific, USA) with excitation/emission of 495/521 nm for the green signal (oxidized) and 575/600 nm for the red signal (non-oxidized). Oxidation of BODIPY 581/591 C11 is presented as a ratio between green fluorescence (oxidized) and total fluorescence (oxidized plus non-oxidized).
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8

Lipid Peroxidation Measurement by C11-BODIPY581/591

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C11-BODIPY581/591 staining was conducted by incubating samples with 5 μM C11-BODIPY581/591 (Thermo Fisher Scientific; cat. #D3861) for 2-3hr at 37 °C. Fluorescence emission around 510 nm, indicative of oxidation, was read out in the GFP or FITC channel by flow cytometry.
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9

Quantifying Lipid Peroxidation by MDA and C11-BODIPY

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The level of lipid peroxidation was determined by measuring the amount of MDA produced by the thiobarbituric acid reaction as described by Campo et al. (2014 ). Briefly, samples (0.05 g) were homogenized in 1 ml of 80% (v/v) ethanol and centrifuged at 16,000g for 20 min at 4 °C. The supernatant (0.5 ml) was recovered and mixed with 0.5 ml of 20% (w/v) trichloroacetic acid containing 0.65% (w/v) thiobarbituric acid. The mixture was incubated at 85 °C for 30 min and then quickly cooled in an ice bath. After centrifugation (10,000g, 10 min), the absorbance of the supernatant was measured at 532 nm and 600 nm (Spectramax M3 reader, Molecular Devices, USA). The value for nonspecific absorption at 600 nm was substracted from the 532 nm reading. The MDA content was calculated using its molar extinction coefficient (156 mM−1 cm−1), and the results are expressed as mM MDA/g fresh weight (FW).
C11-BODIPY581/591 (Thermo Fisher Scientific) was used to visualize lipid peroxidation (10 µM C11-BODIPY581/591) following the procedure described by Shen et al. (2020 (link)). Epifluorescence of fluorescent dye was visualized using a Leica DM6 and the fluorescence emitted by oxidized C11-BODIPY581/591 was observed at 488 nm in an Leica DM6 microscope under GFP fluorescence (488 nm excitation, 509 nm emission).
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10

Lipid Peroxidation Imaging in Neuronal Cells

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The lipophilic probe C11BODIPY581/591 (Thermo Fisher Scientific, Waltham, MA, USA) was used to detect lipid peroxidation. Fluorescence changes (i.e., shifts from red to green upon oxidation) indirectly reflect the oxidation of unsaturated fatty acids [32 (link)]. Neuronal cells in the control, M0-Exosome, and M1-Exosome groups were stained with 1 µM C11BODIPY581/591 and Hoechst 33342 (Thermo Fisher Scientific, Waltham, MA, USA) for 30 min at 37 °C in a 5% CO2 incubator and then assessed by laser confocal microscopy (Zeiss LSM800; Zeiss AG; Oberkochen, Germany) according to the manufacturer’s instructions. Lastly, data were quantified using ImageJ software (National Institutes of Health).
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