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16 protocols using md498

1

Fiber Photometry Recordings for GCaMP6f Fluorescence

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Fiber photometry recordings were performed similarly to those in ref. 25 (link). Briefly, we sinusoidally modulated blue light from a 470-nm excitation LED (M470F3, Thorlabs, NJ, USA) at 211 Hz, using a custom Matlab program (MathWorks, Natick, MA, USA) and a multifunction data acquisition device (NI USB-6259, National Instruments, Austin, TX, USA). The blue light was passed through a GFP excitation filter (MF469-35, Thorlabs), reflected off a dichroic mirror (MD498, Thorlabs), and coupled using a fiber collimation package (F240FC-A, Thorlabs) into a low-fluorescence patch cord (400 μm, 0.48 NA; Doric Lenses) connected to the implanted optic fiber (400 μm, 0.48 NA; Doric Lenses) by a zirconia sleeve (Doric Lenses). GCaMP6f fluorescence was collected through the excitation patch cord, passed through a GFP emission filter (MF525-39, Thorlabs), and focused onto a photodetector (Model 2151, Newport, Irvine, CA, USA) using a lens (LA1540-A, Thorlabs). The signal was sent to a lock-in amplifier (30-ms time constant, Model SR830, Stanford Research Systems, Sunnyvale, CA, USA) that was synchronized to 211 Hz. Signals from the amplifiers were collected at 1 KHz using a custom Matlab program and a multifunction data acquisition device (National Instruments).
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2

Fiber Photometry Recording of GCaMP6s Signals

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After implant of the fiber, mice were individually housed for at least 10 days for recovery from the surgery and expression of the virus. Fluorescence emission was recorded with a fiber photometry system (Thinkerbiotech, Nanjing, China) using methods similar to previous studies (Guo et al., 2015 (link); Li et al., 2016 (link)). Briefly, a laser beam from a 488 nm laser (OBIS 488LS; Coherent) was reflected by a dichroic mirror (MD498; Thorlabs), focused through an objective lens (x10, NA = 0.3; Olympus) and then coupled to an optical commutator (Doric Lenses). An optical fiber (200 mm O.D., NA = 0.37, 1.5 m long) coupled the light between the commutator and the implanted optical fiber. The laser power was adjusted at the tip of the optical fiber to the level of 40–60 μW. The GCaMP6s fluorescence emission was bandpass filtered (MF525-39, Thorlabs) and detected by a photomultiplier tube (R3896, Hamamatsu). An amplifier (C7319, Hamamatsu) was used to convert the photomultiplier tube current output to voltage, which was further filtered through a low-pass filter (35Hz cut-off; Brownlee 440). The analog voltage signals were digitalized at 500 Hz and recorded by fiber photometry software (Thinkerbiotech, Nanjing, China).
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3

Optical Fiber-Based Calcium Imaging

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A custom-built optical fiber recording set-up (Dual-Channel Fiber Photometry, Thinker Tech Nanjing Biotech Co., Ltd., Nanjing, China) and software (model “Fiber Photometry v3.0,” Thinker Tech Nanjing Biotech Co., Ltd., Nanjing, China) were used to acquire and analyze Ca2+ transients resulting from the change in fluorescence (ΔF/F) of the GECI. The light intensity of LED excitation (wavelength 470 nm or 580 nm) through the optical fiber was approximately 0.375 mW/mm2 at the fiber tip (diameter 200 µm; Numerical Aperture (NA), 0.37; Inper, Hangzhou, Zhejiang, China). The excitation light passed through multiple dichroic mirrors (MD498; Thorlabs) and converged through the objective lens (NA = 0.4, Olympus). Then, the excitation light reached the sample through the optical fiber. Emission light generated by the calcium indicator was collected by the optical fiber and detected by a highly sensitive photomultiplier tube (PMT, H10721-210, Hamamastsu, Japan), and then the signals were output as voltage and were recorded in real time after filtering and amplification by a data acquisition card (DAQ, Thinker Tech Nanjing Biotech Co., Ltd., Nanjing, China).
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4

Fiber Photometry for Calcium Imaging

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Fiber photometry was performed using a previously described system (Zhou et al., 2017 (link); Sun et al., 2019 ; Wang et al., 2019 (link), 2020 (link); Wu et al., 2020 (link)). To record fluorescent signals, the beam from a 488 nm laser (OBIS 488LS, Coherent) was reflected by a dichroic mirror (MD498, Thorlabs), focused by an objective lens (10×, NA: 0.3; Olympus), and then coupled to an optical commutator (Doric Lenses). An optical fiber (200 mm o.d., NA: 0.37, 1.5 m long) coupled the light between the commutator and the implanted optical fiber. GCaMP6s fluorescence was collected by the same fiber and objective, then bandpass-filtered (MF525–39, Thorlabs) and detected by a photomultiplier tube (R3896, Hamamatsu). An amplifier (C7319, Hamamatsu) converted the photomultiplier tube current output to a voltage signal, which was further filtered through a low-pass filter (35 Hz cut-off; Brownlee, 440). The analog voltage signals were digitized at 500 Hz and recorded by fiber photometry software (Thinkerbiotech, Nanjing, China) for the duration of each behavioral session.
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5

Fluorescence Ca2+ Imaging in V1

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For fluorescence Ca2+ recordings, light from a 473-nm LED was reflected by a dichroic mirror (MD498, Thorlabs). The emission signals collected through the implanted optical fiber in V1 were filtered by a bandpass filter (MF525-39, Thorlabs) and detected by a photomultiplier tube (PMT, R3896, Hamamatsu). The light at the tip of the optical fiber was adjusted to 10–30 μW to minimize bleaching. An amplifier converted the output of the PMT to voltage signals, which were digitized using a data acquisition card (USB6009, National Instrument) at 200 Hz with custom-written programs.
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6

Fiber Optic Recording of GCaMP6m Signals

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Following AAV-DIO-GCaMP6m virus injection, an optical fibre (230 μm O.D., 0.37 numerical aperture (NA); Shanghai Fiblaser) was placed in a ceramic ferrule and inserted towards the DRN through the craniotomy. The ceramic ferrule was supported with a skull-penetrating M1 screw and dental acrylic. Mice were individually housed for at least 1 week to recover.
To record fluorescence signals, laser beam from a 488-nm laser (OBIS 488LS; Coherent) was reflected by a dichroic mirror (MD498; Thorlabs), focused by a × 10 objective lens (NA=0.3; Olympus) and then coupled to an optical commutator (Doric Lenses). An optical fibre (230 μm O.D., NA=0.37, 2-m long) guided the light between the commutator and the implanted optical fibre. The laser power was adjusted at the tip of optical fibre to the low level of 0.01–0.02 mW, to minimize bleaching. The GCaMP fluorescence was bandpass filtered (MF525-39, Thorlabs) and collected by a photomultiplier tube (R3896, Hamamatsu). An amplifier (C7319, Hamamatsu) was used to convert the photomultiplier tube current output to voltage signals, which was further filtered through a low-pass filter (40 Hz cut-off; Brownlee 440). The analogue voltage signals were digitalized at 500 Hz and recorded by a Power 1401 digitizer and Spike2 software (CED, Cambridge, UK).
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7

Fiber Photometric System for In Vivo Analysis

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Details for the fiber photometric system are described previously81 (link). The excitation source is a 488 nm semiconductor laser (Coherent, Inc. OBIS 488 LS, tunable power up to 60 mW). A dichroic mirror with a 452–490 nm reflection band and a 505–800 nm transmission band (Thorlabs, Inc. MD498) is employed for wavelength selection. A multimode fiber (Thorlabs, Inc., 200 μm in diameter and 0.39 in numerical aperture) coupled to an objective lens (Olympus, ×10, NA 0.3) is used for optical transmission. The fluorescence signals are collected with a photomultiplier tube (PMT) (Hamamatsu, Inc. R3896) after filtering by a GFP bandpass filter (Thorlabs, MF525-39). An amplifier (C7319, Hamamatsu) is used to convert the current output from the PMT to voltage signals, which are further filtered through a lowpass filter (40 Hz cutoff; Brownlee 440, USA). The fluorescence signals are digitalized at 100 Hz and recorded by a Power 1401 digitizer and Spike2 software (CED, UK). Photometric data are exported and analyzed with MATLAB. The fluorescence signals (ΔF/F0) are processed by averaging the baseline signal F0 over a 4.5-s long control time window and presented as heatmaps or per-event plots. AUC (area under the curve) of the DA signal is used for statistical analysis. AUC is the integral of a curve that describes the variation of DA signals during light stimulation.
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8

Fiber Photometry for Real-Time GCaMP6 Monitoring

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Following AAV-EF1α-DIO-GCaMP6f virus injection, an optical fiber (125 µm O.D., 0.37 numerical aperture (NA); Newdoon, Shanghai) was placed in a ceramic ferrule and inserted towards the NAc. Fiber photometry53 (link) uses the same fiber to both excite and record from GCaMP in real time. To record fluorescence signals, laser beam was passed through a 488 nm laser (OBIS 488LS; Coherent), reflected off a dichroic mirror (MD498; Thorlabs), focused by objective lens (Olympus), and coupled through a fiber collimation package (F240FC-A, Thorlabs) into a patch cable connected to the ferrule of the upright optic fiber implanted in the mouse via a ceramic sleeve (125 µm O.D.; Newdoon, Shanghai). GCaMP6 fluorescence was bandpass filtered (MF525–39, Thorlabs) and collected by a photomultiplier tube (R3896, Hamamatsu). An amplifier (C7319, Hamamatsu) was used to convert the photomultiplier tube current output to voltage signals, which was further filtered through a low-pass filter (40 Hz cut-off; Brownlee 440). The photometry voltage traces were downsampled using interpolation to match the EEG/EMG sampling rate of 512 Hz by using a Power1401 digitizer and Spike2 software (CED, Cambridge, UK). Analysis of the resulting signal was performed with custom written MATLAB software.
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9

Fiber Photometry for Behavior and Calcium Signals

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Customized fiber photometry experiments were performed as previously described (62 (link)). Excitation from a 488 nm laser (OBIS 488LS; Coherent) produced fluorescence signals that were reflected by a dichroic mirror (MD498; Thorlabs). The light was transmitted through an optical fiber (200 mm OD, NA = 0.37, 1 m long) between the rotary joint and the implanted fiber. The analog voltage signals were digitized at 50 Hz. The fiber photometry experiment was conducted using a fiber photometry system purchased from ThinkerTech Nanjing BioSicence Inc. For the NORT, mice were allowed to visit objects as described above, along with video recording and fiber photometry acquisition to synchronously record behaviors and calcium signals. All the GCaMP6s signals were subtracted from the background and segmented based on behavioral events in individual trials. We calculated the values of fluorescence change as follows: (ΔF/F) by (F – F0)/F0, where F0 was defined as the average fluorescence signal from 2 seconds preceding event onset. The ΔF/F data were assessed with an average line with a shaded area indicating SEM.
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10

Fluorescence Imaging of GCaMP6f and GRABDA

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To record fluorescence signals for the GCaMP6f and GRABDA sensors, a laser beam from a 488 nm laser (OBIS 488LS; Coherent) was reflected by a dichroic mirror (MD498; Thorlabs, Newton, NJ, USA) (Li et al., 2016 ) (Thinkertech Nanjing Bioscience Inc, Co., Ltd.).
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