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7 protocols using anti human cd16

1

Single-cell Secretome Analysis of NK Cells

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The single-cell secretome analysis was performed using the IsoCode chip from IsoPlexis using the human NK cytokine panel. The assay was performed using the manufacturer’s kit and following the manufacturer’s instructions (IsoPlexis). In brief, NT-NK cells were stimulated using purified anti-human CD16 (BD Pharmingen, 555404; 1 μg ml−1) and CAR-NK cells were stimulated using human CD19 antigen (ACRO, CD9-H5259; 10 μg ml−1) for 4 h at 37 °C. NK cells were washed and labeled with a fluorescent dye (IsoPlexis stain cell membrane 405), and 30,000 cells were loaded onto the IsoCode chips. The IsoLight device was used to scan the chips, and IsoPlexis’s proprietary IsoSpeak software was used to analyze the data. The PSI, as computed by the software, was used for data representation. Stimulatory cytokines comprised GM-CSF, IL-12, IL-15, IL-2, IL-21, IL-5, IL-7, IL-8 and IL-9. Effector cytokines comprised GZMB, IFN-γ, MIP-1α, perforin, TNF-α and TNF-β. Chemokines comprised CCL-11, IP-10, MIP-1β and RANTES55 (link).
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2

PBMC Expansion and Activation Protocol

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The KBM502 (cat no. 16025020; KOHJIN Bio, Sakado city, Saitama, Japan)-based culture medium used to expand and activate the isolated PBMC was supplemented with the following ingredients; 0.5% or 10% autologous human plasma depending on the step, each 2.5 μg of 3 different agonistic antibodies (anti-human CD56 (cat. no. 555513 and clone B159 (RUO); BD Biosciences, San Jose, CA, USA), anti-human CD16 (cat. no. 555403 and clone 3G8 (RUO); BD Biosciences) and anti-human CD355 (cat. no. MAB1850–500 and clone #195314; R&D SYSTEMS, Minneapolis, MN, USA)), and 3 different cytokines (200 ng/mL of IL-2 (cat. no. 653601261; Norvatis, Whippany, USA), 10 ng/mL of IL-12 (cat. no. 200–12; PEPROTECH, Rocky Hill, NJ, USA) and 100 ng/mL of IL-18 (cat. no. B003–2; R&D SYSTEMS)). All the cytokines were from PEPROTECH (Rocky Hill, NJ, USA).
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3

Ex vivo expansion of natural killer cells

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A house protocol describing the preparation of ex vivo expanded NKLs has been recently published [6 (link)]. Briefly, blood samples were collected from healthy donors, and PBMCs and plasma were collected from buffy coats and the upper aqueous phase of blood, respectively, by density gravity centrifugation (Ficoll-Paque, GE Healthcare, Piscataway, NJ, USA). For expansion and activation of NKLs, isolated PBMCs were supplemented with the following bioactive components: 0.5% or 10% autologous human plasma depending on the step, 3 different agonistic antibodies, and 3 different cytokines. The cells were cultured for 2 weeks to produce a sufficient number of NKLs. The following antibodies and cytokines were used: anti-human CD56 (555513, BD Biosciences, San Jose, CA, USA), anti-human CD16 (555403, BD Biosciences), anti-human CD355 (MAB1850-500, R&D SYSTEMS, Minneapolis, MN, USA), IL-2 (653601261, Novartis, Whippany, NJ, USA), IL-12 (200-12, PeproTech, Rocky Hill, NJ, USA), and IL-18 (B003-2, R&D Systems).
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4

Quantifying Inflammatory Monocytes and P2X7 Expression

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Frozen human peripheral blood mononuclear cells (PBMCs) were thawed and dead cells were removed (Miltenyi Biotec). Live cells were incubated with Human BD FC block (BD Biosciences). Cells were stained with anti-human CD14, anti-human CD16 (BD Biosciences), and anti-human P2X7 receptor (clone L4) (Buell et al., 1998 (link)). Cells were subjected to flow cytometry analysis in a Cube 8 flow cytometer (Sysmex) The frequency of inflammatory monocytes (CD14+CD16high) and the mean fluorescent intensity of the P2X7 receptor were determined with FCS Express 5 software (DeNovo Software).
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5

Phospho-flow Analysis of CD16 Signaling

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BD Perm buffer III (BD Biosciences, La Jolla, CA) was used for phospho-flow analyses according to the manufacturers’ protocols. Briefly, cells were opsonized with anti-human CD16 (BD Biosciences, clone 3G8, La Jolla, CA) followed by cross-linking with secondary goat-anti-mouse F(ab)’2, (Jackson ImmunoResearch Laboratories, West Grove, PA). Reactions were immediately stopped after 2.5 minutes (experimentally determined, data not shown) with equal volumes of Fix Buffer I (BD Biosciences, La Jolla, CA). After washing, unused/ unoccupied sites of the secondary antibody were blocked with normal mouse serum (ThermoFisher) for 10 minutes at room temperature. Fixation was followed by surface stain, permeabilization with Perm Buffer III for 30 minutes on ice, followed by intracellular staining at room temperature according to the manufacturer’s protocol.
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6

Multiparametric Flow Cytometry of PBMCs

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Cryopreserved PBMCs were thawed, washed, and stained with Live/Dead Aqua Blue (Life Technologies), followed by surface staining with antihuman CD3 BV605, anti-human CD4 BV650, anti-human CD8 BV711, anti-human CD27 PerCP-eF710, CD45RO PE-CF594 (BD Biosciences), anti-human CD98 PE (BD Biosciences), anti-human CD71 APC, anti-human PD-1 PE-Cy7, and anti-human T-Bet BV421 (all from BioLegend unless otherwise noted). Anti-human CD14, anti-human CD16, and anti-human CD19 all tagged with V500 (BD Biosciences) were added in dump. For median fluorescence index determination, manual target channeling was performed with 1× beads (SpiroTech). Samples were run on modified 5 laser BD LSR Fortessa X-20. Data were analyzed on FlowJo (FlowJo).
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7

Phospho-flow Analysis of CD16 Signaling

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BD Perm buffer III (BD Biosciences, La Jolla, CA) was used for phospho-flow analyses according to the manufacturers’ protocols. Briefly, cells were opsonized with anti-human CD16 (BD Biosciences, clone 3G8, La Jolla, CA) followed by cross-linking with secondary goat-anti-mouse F(ab)’2, (Jackson ImmunoResearch Laboratories, West Grove, PA). Reactions were immediately stopped after 2.5 minutes (experimentally determined, data not shown) with equal volumes of Fix Buffer I (BD Biosciences, La Jolla, CA). After washing, unused/ unoccupied sites of the secondary antibody were blocked with normal mouse serum (ThermoFisher) for 10 minutes at room temperature. Fixation was followed by surface stain, permeabilization with Perm Buffer III for 30 minutes on ice, followed by intracellular staining at room temperature according to the manufacturer’s protocol.
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