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Carboxyfluorescein succinimidyl ester (cfse)

Manufactured by Cytek Biosciences
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CFSE is a fluorescent dye used for cell tracking and proliferation analysis. It binds to cellular proteins, allowing the visualization and quantification of cell division in various cell types.

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12 protocols using carboxyfluorescein succinimidyl ester (cfse)

1

Evaluating CD8+ T Cell Proliferation

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Spleens from C57BL/6 mice were dissociated and treated with ammonium-chloride-potassium (ACK) to do the lysis of red blood cells for 5 min at 4°C, and after washing with 1× PBS, 1 × 107 cells were incubated with 1 mg/mL of Mitomycin C (Sigma, USA) for 45 min at 37°C (these cells are referred to as APCs). The remainder of the splenocytes were used to separate CD8-positive cells by negative selection as described, and purity was assessed by CD8+ flow cytometry. CD8+ T cells were then labeled with CFSE (Thermo, USA) (1 μM). Tregs were transduced with RNAi viral vectors, using MOI = 10, in DMEM 10% FBS, supplemented with 8 μg/mL of polybrene or incubated with 500 nM of TGS-Aptamers in DMEM 10% FBS. CFSE-labeled CD8+ cells stained with CFSE and the APCs were plated with anti-CD3e antibody (clone 145-2C11, TONBO Biosciences, USA) at 0.5 μg/mL. After 72 h the cells were labeled with anti-CD8-PE (TONBO Biosciences, USA) and the proliferation of CD8 cells was assessed by the CFSE profile. CD8-PE labeling allows the exclusion of Tregs from the analysis.
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2

Isolation and TH2 Polarization of Murine Naïve CD4+ T Cells

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The EasySep mouse naïve CD4+ T cell isolation kit (Stemcell Technologies) was used to isolate splenic T cells. Cells were cultured in complete IMDM (cIMDM, with added 10% FBS, L-glutamine, sodium pyruvate, non-essential amino acids, penicillin/streptomycin, and 2-ME) with plate-bound anti-CD3 antibody (2 μg/mL) and anti-CD28 antibody (2 μg/ml). IL-4 (10 ng/mL) and anti-IFN-γ (5 μg/mL) were added at the start of culture to generate TH2 cells. Cells were split at d3. On d4, cells were counted and stimulated for 24 hours with plate-bound anti-CD3 and anti-CD28 for assessment of secreted cytokines. In some experiments, naïve CD4+ T cells were labelled with 40 μM CFSE (Tonbo) for 10 min at room temperature, followed by culture under TH2 polarizing conditions as above and assessment of CFSE dilution by flow cytometry on d3.
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3

T Cell Proliferation Assay with CFSE Labeling

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T lymphocyte cell proliferation assay was performed according to a reported method58 (link) with some modification. Briefly, 5 × 106 cells /mL cells were stained 2.5 μM CFSE (Tonbo Biosciences) and incubated at 37 °C for 12 min. Then washed and discarded the supernatant and adjusted the CFSE stained cell to 1.75 × 106 cells /mL. Cells were diluted in 1640 completed medium containing 5 μg/mL anti-CD3 antibody (Tonbo Biosciences) to 3 × 105 cells/mL and seed in a 96-well plate or 24-well plate that pre-packaged 0.4 μg/well anti-CD28 antibody and 1.6 μg anti-CD28 antibody (24-well) (Tonbo Biosciences). Cells were then cultured for 3 days, 9 days or 12 days. Subsequently, the proportion of CD4+ and CD8+ cells was determined by flow cytometry (Beckman Coulter, FC500) according to manufacturer’s instruction of PE-Cyanine7 anti-Human CD8a and PE anti-Human CD4 antibodies (Tonbo Biosciences). Data analyzing was performed by using CXP software (Beckman Coulter, Supplementary Fig. 8).
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4

Adoptive Transfer of CFSE-Labeled B Cells

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C57BL/6 J wild-type (Stock# 000664), μMT (Stock# 002288), and CD45.1 congenic (Stock# 002014) mice were purchased from Jackson Labs. Blimp-1-YFP mice were a gift of Dr. Sue Kaech42 (link). All experimental mice were between 6 and 9 weeks of age. CD43 splenic B cells were purified from naive mice by magnetic purification according to the manufacturer’s instructions (Miltenyi Biotech). To induce B cell differentiation, 50 μg LPS (Enzo Life Sciences, ALX-581-008) was i.v. injected into naive mice and three days later CD138+ splenic plasmablasts were isolated by FACS2 (link). For division labeling, purified B cells were stained with 2 μM CFSE (Tonbo Biosciences) for 8 min or 5 μM CTV (ThermoFisher Scientific) for 20 min at room temperature protected from light. CFSE staining was quenched with 1 volume FBS, and for both dyes, cells were washed with 5 volumes B cell media (RPMI 1640, 10% heat-inactivated FBS, 10 mM HEPES, 1 mM sodium pyruvate, 1× non-essential amino acids, 1× PeneStrep, 0.05 mM 2-ME), and either cultured or adoptively transferred into μMT hosts. For in vivo LPS challenge, one day post adoptive transfer mice were injected i.v. with 50 μg LPS as above. All animal experiments were approved by the Emory University Institutional Animal Care and Use Committee.
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5

Visualizing Bacteria Binding and Phagocytosis by Neutrophils

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To visualize binding and phagocytosis of bacteria by neutrophils, neutrophils (isolated from separate donors) were diluted to 2.0 × 106 cells/ml and seeded onto tissue culture-treated glass coverslips with 1% HSA or 1% NHS (45 (link), 46 (link)). Bacteria were resuspended to an OD600 of ∼0.8 in PBS, stained with 5 μg/ml CFSE (Tonbo Biosciences, San Diego, CA) for 20 min at 37°C, and washed twice with PBS. CFSE-stained bacteria were added at an MOI of 10:1 and centrifuged at 1,000 rpm for 2 min. Samples were incubated for 30 min at 37°C with 5% CO2. Cells were washed twice with PBS to remove nonadherent bacteria and were fixed at RT for 15 min using 4% paraformaldehyde in PBS. Samples were incubated with anti-K. kingae antibody (1:500) overnight at 4°C. The anti-K. kingae antibody was generated against an acetone powder of K. kingae strain KK01 whole bacteria. Cells were washed twice with PBS and incubated with a 1:500 dilution of goat anti-guinea pig IgG DyLight 649-conjugated antibody (Rockland, Limerick, PA).
Visualization of bacteria-neutrophil association was performed by microscopy using a Nikon Eclipse Ni-E (Nikon Instruments, Inc., Melville, NY) with either a 20× objective or 60× oil objective. For quantification, 100 neutrophils per replicate were chosen at random for analysis; the cell-associated and extracellular bacteria were counted by a blinded reader.
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6

CFSE-based Cell Proliferation Assay

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For proliferation assays, cells were labelled with 5 μM carboxyfluorescein succinimidyl ester (CFSE; Tonbo Biosciences) for 8 min at 37°C and seeded at progressively reduced density (no less than 3 000 cells/cm2). After recovery for 24 h, samples were collected at 24-h intervals and fixed in 70% ice-cold ethanol. CFSE fluorescence intensity was recorded for 10 000 single-cell events using a BDAccuri C6 flow cytometer (BD Biosciences). The mean of fluorescence intensity (MFI) of the green FL1-A channel (excitation 488 nm, emission 530 ± 15 nm) was calculated using FlowJo software. Relative growth for each time point was calculated by normalizing MFI–1 of individual time points to the MFI–1 value at 24 h post-seeding.
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7

Cytotoxicity Assay for Leukemia Cells

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Target leukemia cells were stained with CFSE (Tonbo) or CellTrace Violet (Thermo) and T cells were left unstained or stained with CellTrace Yellow prior to coculture. Target cells and T cells were cocultured in 96 well u-bottom plates for up to 72 h. Count beads (Invitrogen) were added to each sample to determine absolute cell counts. After coculture, cells were stained with Near IR Live/Dead for viability and fixed with 4% formaldehyde prior to flow cytometric analysis. Test compounds for which multiple donors or multiple replicates were unobtained, or T cell donors from whom drug-induced lysis was not observed, were excluded from analysis. Specific lysis was calculated using the equation: %specific lysis = 100(%treated sample [violet+NIR LD+] - %isobeads[violet+NIR LD+])/(100–%isobeads[violet +NIR LD+]). Lysis measurements in all cases, including blinatumomab-treated controls, were <100%.
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8

Modulating CD8+ T Cell Proliferation

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A 24-well plate was coated with 1 μg/well of the anti-CD3e antibody. CD8+ T cells were purified from the spleen of a Balb/c mouse using T-cell isolation columns (R&D systems, Minneapolis, MN, USA) according to the manufacturer's instructions and labeled with carboxyfluorescein succinimidyl ester (CFSE). In order to assess the impact of MDSC on CD8+ T cell proliferation, CD8+ T cells were co-cultured with MDSC with or without E2, ICI 182,780, and JSI-124 for 48 hours. T-cell proliferation was evaluated by flow cytometry. CFSE was purchased from Tonbo Biosciences (San Diego, CA, USA).
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9

OT-I Splenocyte Activation and Glucose Uptake

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Splenocytes from OT-I mice were activated with OVA peptide 10 μg/ml (GenScript)/APCs, recombinant huIL-2 100 units/mL (Thermo Fisher) in complete RPMI media (Gibco). In some experiments, cells were labeled with CFSE 5 μM (TONBO) to track cell division. Some cells were incubated with iPI3Kδ 10 μg/ml. Cells were collected after 3 or 4 days, washed with FACS buffer and stained for CD8 followed by fixation and permeabilization and staining of pS6 and TCF1. Glucose uptake was measured after collection by washing cells two times, and incubating cells in 2-NBDG3 100 μM (Cayman) at 45 mins, 37C in the dark.
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10

CFSE-Based Proliferation Assay with Fatostatin Treatment

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For the proliferation assay with 1.5 µm carboxyfluorescein succinimidyl ester (CFSE) (#150347‐59‐4; Dojindo, Rockville, MD, USA), 293/null cells were resuspended in growth medium at a density of 106·mL−1 and cultured in six‐well plates with 0, 10 or 20 µm fatostatin. CFSE‐treated cells that were cultivated in the absence of DMSO or fatostatin were used as negative controls. Cells were labeled with CFSE in accordance with the manufacturer’s instructions (#13‐0850‐U50; TONBO Biosciences, San Diego, CA, USA). The 293/null cells were incubated at 37 °C in 5% CO2 and harvested 44 h after fatostatin treatment. Cells were washed once with 1 × phosphate‐buffered saline and 1 × binding buffer (#00‐0055; Invitrogen, Waltham, MA, USA) each, at 620 g for 3 min. The pellet was resuspended in 200 µL of 1 × binding buffer, and incubated on ice for 15 min after the addition of 5 µL of 7‐AAD Viability Staining Solution (#559925; BD, Franklin Lakes, NJ, USA). Cell divisions were measured using a LSRFortessa cytometer (BD) and data were analyzed using flowjo, version 10.4 (BD).
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