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Lyec rna

Manufactured by InvivoGen
Sourced in United States

LYEC-RNA is a laboratory equipment designed for the extraction and purification of RNA from various biological samples. It utilizes a lyophilization (freeze-drying) technique to concentrate and stabilize the RNA. The core function of LYEC-RNA is to provide a reliable and efficient method for obtaining high-quality RNA for downstream applications such as gene expression analysis, reverse transcription, and other molecular biology techniques.

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8 protocols using lyec rna

1

Microglial Phagocytosis Assay with Opsonized Beads

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60,000 microglia were plated on a NuncTM Lab-TekTM II 8 Chamber SlideTM (Thermo Fischer Scientific, #154534PK, Waltham, MA, USA) and incubated with the indicated oligoribonucleotides complexed to LyoVec (InvivoGen #LYEC-RNA, San Diego, CA, USA). After 2 h, microglia were analyzed by phagocytosis bead assay, as described [36 (link)]. Briefly, red fluorescent latex beads (size 1 μm; Sigma Aldrich, #L2778, St. Louis, MO, USA) were pre-opsonized in FCS for 1 h at 37 °C. Subsequently, the suspension was diluted at 1:5 in DMEM (Invitrogen #41965062, Carlsbad, CA, USA) and added to microglial cell cultures at 0.01% (v/v). One hour later, microglia were washed 3x with PBS and fixed with 4% paraformaldehyde (PFA). Immunolabeling with Iba1 antibody and subsequent microscopic analysis were performed, as described above. Red signal intensity within Iba1-positive image areas was quantified using FiJi software [37 (link)], as described previously [36 (link)].
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2

SARS-CoV-2 RNA fragment-induced cytokine response

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Primary cultured mouse microglia, THP-1-derived macrophages, and human iPSC-derived microglia cells were incubated with 10 µg/ml of SARS-CoV-2 RNA fragments or control oligonucleotide complexed to LyoVec (InvivoGen #LYEC-RNA, San Diego, CA, USA) for 24 h. Subsequently, supernatants were collected and stored at -80°C. TNF and IL-6 concentrations in the supernatants were measured by Enzyme-Linked Immunoabsorbent Assay (ELISA) according to the manufacturer’s instruction (TNF alpha Mouse Uncoated ELISA Kit, Invitrogen, #88–7324-88, Carlsbad, CA, USA; TNF alpha Human Uncoated ELISA Kit, Invitrogen, #88–7346-88, Carlsbad, CA, USA; IL-6 Human Uncoated ELISA Kit, Invitrogen, #88–7066-88, Carlsbad, CA, USA).
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3

Microglia Modulation by miRNA Transfection

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Microglia were isolated and plated into a 96-well plate at a density of 3 × 104 cells/well. On the next day, microglia were incubated with synthetic mmu-miR-340-3p (5 µg/mL) or mmu-miR-132-5p (5 µg/mL) oligoribonucleotide complexed with LyoVec (InvivoGen #LYEC-RNA, San Diego, CA, USA) for various time intervals (9, 24, or 36 h) using various dosages (0.1, 1, 5, or 10 µg/mL). Subsequently, supernatants were collected and stored at −80 °C. TNF concentrations in the supernatants were assessed using the TNF mouse uncoated ELISA Kit provided by (Thermo Fisher Scientific, # 88-7324-88, Waltham, MA, USA) according to the manufacturer’s protocol.
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4

Profiling Microglial Inflammatory Cytokines

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Primary cultured microglia (2 × 105 cells/ml) in 96-well plates were incubated with miRNA complexed to LyoVec (InvivoGen #LYEC-RNA, San Diego, CA, USA) at a concentration of 5 μg/ml for indicated durations. Cell-conditioned medium was subsequently collected and analyzed via a customized mouse Procarta Plex Mix and Match 15-plex (eBioscience Inc., San Diego, CA, USA) panel following the manufacturer’s instructions. Briefly, 50 μl magnetic capture beads were plated on a 96-well plate. After washing, 50 μl of cell-conditioned medium were added to each well. The plate was shaken at room temperature for 30 min before being incubated overnight at 4 °C. On the following day, 30 μl of detection antibody mixture were added to each well, and the plate was placed on a shaker at 500 rpm for 30 min. Following washing, the plate was incubated with 50 μl streptavidin/well for 30 min on a shaker, and Reading Buffer was added. Read-out was performed on a Luminex 200 device Bio-Plex Software 4.0 (Bio-Rad Laboratories, Hercules, CA, USA).
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5

Microglia-Mediated Cytokine Response to miRNAs

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Primary cultured mouse microglia or human-derived THP-1 cells were incubated with indicated concentrations of miRNAs complexed to LyoVec (InvivoGen #LYEC-RNA, San Diego, CA, USA) for indicated durations in 96-well plates (30,000 cells/well). Subsequently, supernatants were collected and stored at − 80 °C. TNF-α amounts were detected via Enzyme-Linked Immunoabsorbent Assay (ELISA; TNF alpha Mouse Uncoated ELISA Kit, Invitrogen, #88–7324-88, Carlsbad, CA, USA) or TNF alpha Human Uncoated ELISA Kit (Invitrogen, #88–7346-88, Carlsbad, CA, USA), according to the manufacturer’s instruction.
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6

TLR7/8-mediated miRNA Reporter Assay

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HEK-Blue TLR reporter and corresponding Null control cell lines were purchased from InvivoGen, San Diego, CA, USA. One day after seeding 50,000 cells/well in a 96-well plate, HEK-Blue SEAP reporter 293 cells expressing mTLR7, mTLR8, hTLR7 or hTLR8 and the inherent control cells were incubated with different miRNA mimics or control oligoribonucleotide (10 µg/mL) using LyoVec as tranfection agent (InvivoGen #LYEC-RNA, San Diego, CA, USA) according to the manufacturer’s protocol. Cells were stimulated with indicated agents dissolved in 90% HEK-Blue detection reagent and 10% culture media. Detection of the reporter protein secreted embryonic alkaline phosphatase (SEAP) was performed at 655 nm using Varioskan Flash (Thermo Fisher Scientific, Waltham, MA, USA). For each condition, four wells were individually measured, and the average was used for evaluation.
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7

Microglia Response to let-7b

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Primary cultures of microglia were generated from C57BL/6 mice as described above. Microglia were incubated with 5 µg/ml of let-7b or mutant oligoribonucleotide for indicated durations, or were exposed to increasing concentrations of let-7b or mutant oligoribonucleotide, as indicated, complexed to the transfection agent LyoVec (InvivoGen #LYEC-RNA, San Diego, CA, USA) for 12 h. Conditioned medium was collected and analyzed by enzyme-linked immunosorbent assay with hamster antibody against mouse TNF-α (BD Biosciences, Franklin Lakes, NJ, USA) as a capture antibody and biotin-labeled antibody against mouse as secondary antibody (BD Biosciences, Franklin Lakes, NJ, USA).
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8

Activation Assay of Murine and Human TLR7 and TLR8

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Human Embryonic Kidney 293 Blue (HEK-Blue) SEAP reporter cells overexpressing murine TLR7, human TLR7, or human TLR8 were used in activation assays. The parental control cell lines HEK-Blue Null2-k, Null1-k and Null1 were used as control. All cell lines were purchased from InvivoGen (San Diego, CA, USA). Cells were seeded into 96-well plates (5 × 104/well). After 24 h, cells were transfected with the synthetic oligonucleotides (5 µg/ml) or control oligonucleotide complexed to the transfection agent LyoVec (InvivoGen #LYEC-RNA, San Diego, CA, USA) according to the manufacturer’s instructions. Cells were stimulated with indicated agents dissolved in HEK-Blue detection reagent (InvivoGen #hb-det2, San Diego, CA, USA). Each condition was performed in duplicate. The reporter protein SEAP was detected using the Varioskan Flash device (Thermo Fisher Scientific, Waltham, MA, USA) at a wavelength of OD 655 nm.
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