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27 protocols using cy3 labeled secondary antibody

1

Visualizing CB2 Expression in MG-63 Cells

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The MG-63 cells were seeded into five confocal microscopy special dishes at a density of 2 × 104 cells/dish. After the treatments, the MG-63 cells were washed three times with phosphate buffer solution (PBS) and then fixed with 4% paraformaldehyde solution for 30 min and blocked with 50 mg bovine serum albumin (BSA)/mL in PBS for 30 min. Cells were incubated with primary anti-CB2 antibody (1 : 50) overnight at 4°C and then washed three times with PBS, before incubation with Cy3-labeled secondary antibody (1 : 200, Beyotime, China) for 1 h at room temperature. The 4′,6-diamidino-2-phenylindole (DAPI) staining solution (200 μL) was added into each dish for 5 min, and then the dishes were washed three times with PBS. CB2 expression was observed by a laser scanning confocal microscope (FV10i, Olympus, Japan) (Excitation = 550 nm, Emission = 570 nm).
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2

NEDD4 Knockdown Immunofluorescence Imaging

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Cells were grown on coverslips in 6-well dishes. Cells were transfected with NEDD4-siRNA for 48 hours and washed with PBS. Next, they were fixed with 2% (w/v) paraformaldehyde and permeabilized with 1% (v/v) Triton X-100. Afterwards, they were blocked with 10% (w/v) normal goat serum in phosphate-buffered saline (PBS) at room temperature for 1 hour. Finally, they were incubated in one of the primary antibodies overnight at 4°C. The following day, cells were washed and incubated for 1 hour with Cy3-labeled secondary antibody (Beyotime, Beijing, China) at room temperature, and then co-stained with DAPI (Sigma-Aldrich, Shanghai, China) to visualize the nuclei. Images were obtained using a fluorescence microscope at a magnification of 200x.
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3

Colocalization of Autophagy and Lysosomal Markers

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The cerebral cortical neurons were plated at a density of 2 × 105 cells on 0.01% poly L-lysine-coated sterile coverslips. After treatment, the cells were fixed with 4% paraformaldehyde for 20 min, permeabilized with 0.3% Triton X-100 at room temperature for 20 min, blocked dropwise with 5% bovine serum albumin (BSA), and incubated at 37 °C for 30 min. The fixed cells were incubated with mouse anti-LC3B (1:300) or rabbit anti-LAMP2 (1:100) overnight at 4 °C. The slides were then washed three times with phosphate-buffered saline (PBS) and incubated at room temperature with Alexa Fluor 488 or a cy3-labeled secondary antibody (Beyotime, Shanghai, China) at a 1:200 dilution based on the source of the primary antibody. Finally, the cells were stained with DAPI, observed, and photographed using a laser confocal microscope (Leica, Wetzlar, Germany). The images for the colocalization analysis (colocalization of LC3 with LAMP2) were calculated using the JaCoP plugin in Image J after the thresholding of individual frames. The colocalization analysis was performed on three independent studies with 50 cells per condition in each experiment.
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4

Nanovaccine Uptake in Macrophages and Fish

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In the cell uptake study, G, MG, SWCNTs-G, and SWCNTs-MG were incubated with 6 × 107 macrophage for 24 h. Macrophages were obtained by centrifugation at 1500 rpm for 2 min. Furthermore, treated macrophages were immunostained with the tissue resident macrophage marker F4/80 primary antibody (1:250, Abcam, Cambridge, England), Cy3-labeled secondary antibody (1:1000, Beyotime. China), and DAPI (Beyotime. China). The cell uptake of fluorescently labeled nanovaccine was analyzed by BD FACSAria flow cytometry (BD, USA) and confocal microscopy (Leica, Germany).
For the detection of nanovaccine in vaccinated fish, carps (80 tail in total) were randomly divided into 4 groups (20 tail/group): G, MG, SWCNTs-G, and SWCNTs-MG group. Each group was immersed with G-FITC, MG-FITC, SWCNTs-G-FITC, and SWCNTs-MG-FITC at 30 mg/L for 6 h, respectively. After vaccination, fishes were transferred to clean water. Tissues including muscle, gill, intestine, kidney, spleen, and liver were isolated from vaccinated fish. Then tissues sections were made and then observed in confocal microscopy (Leica, Germany). Image J software was used to quantify the intensity of fluorescence in each group.
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5

Immunofluorescence Staining of Scar Tissue

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SFs were successively fixed with 4% paraformaldehyde for 15 min and permeabilized by 0.1% Triton X-100 (Beyotime, Haimen, China) for 30 min. Scar tissue slices
or SFs were immersed in goat serum (Solarbio) for 15 min and incubated with anti-F4/80 (Santa Cruz, Santa Cruz, CA, USA, 1:50 diluted by PBS), anti-vimentin
(Abclonal, Wuhan, China, 1:50 diluted by PBS) or anti-α-SMA (Abcam, Cambridge, UK, 1:200 diluted by PBS) at 4°C overnight. Then the tissue slices or SFs were
incubated with Cy3-labeled secondary antibody (Beyotime) diluted by PBS (1:200) at room temperature for 60 min. The samples were washed by PBS to remove the
residual antibodies and stained with DAPI (Aladdin, Shanghai, China). All samples were viewed by a fluorescence microscope (BX53, Olympus, Tokyo, Japan).
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6

GFAP Immunocytochemistry of DRG Cells

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The cells that migrated out after 48 h of DRG culture were taken, and 4% paraformaldehyde (Beyotime, Shanghai, China) was added to fix the cells. After the fixation, the cells were washed 3 times with PBS and permeabilized with 0.5% Triton® X-100 (Beyotime, Shanghai, China) at room temperature for 20 min. After aspirating the cleaning solution, 5% goat serum (Beyotime, Shanghai, China) was added and blocked at room temperature for 30 min. Then, anti-GFAP (Beyotime, Shanghai, China) as the primary antibody at a dilution of 1:10,000 was incubated overnight at 4°C and Cy3-labeled secondary antibody (Beyotime, Shanghai, China) at a dilution of 1:20,000 was incubated at room temperature without light for 1 h. After excessively washing with PBS, the cell nuclei were stained by DAPI and observed under a fluorescence microscope (Olympus, Tokyo, Japan).
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7

Immunofluorescence Staining of Phospho-p65

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LTP-treated cells in 96 well-plate were washed three times with PBS, and then fixed by 4% paraformaldehyde for 10 min, blocked with 10% goat serum at room temperature for 1 h, and incubated with anti-phospho-p65 antibody (1:50, Abcam) overnight. The primary antibody was removed and washed three times with PBS, incubated with CY3-labeled secondary antibody (Beyotime, China) for 1 h. Nuclei were labeled with 1 μg/ml DAPI (Roche, Swiss) for 5 min and washed twice with PBS. Cells were visualized with inverted fluorescence microscope (Nikon, Japan).
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8

Immunofluorescence Staining of β-Catenin

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The cells grown on chamber slides were fixed for 15 min with 4% paraformaldehyde. The samples were permeabilized with 0.1% tritonX-100 for 30 min. Then, the samples were blocked with goat serum for 15 min. Primary antibody against β-catenin diluted in PBS (1:50) were added to the samples and incubated overnight at 4°C. After PBS washing, cells were incubated with Cy3-labeled secondary antibody (1:200, Beyotime, China) diluted in PBS for 1 h at room temperature. The nuclei were stained with DAPI. After three additional 5-minutes washing, samples were sealed by antifade reagent and visualized with an OLUMPUS fluorescence microscope (at 400× magnification).
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9

Immunofluorescence Analysis of β-catenin in Sca-1+ HSC/HPCs

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Sca-1+ HSC/HPCs were gathered after the treatment and washed twice with PBS. The cell suspension was dispersed onto the glass slides. For immunofluorescence analysis, cells were fixed with 4% PFA for 10 min and washed with TBS with 0.3% Triton X-100 followed by blocking with 10% goat serum for 40 min at room temperature. Slides were then incubated with antibodies against β-catenin (1 : 100) (Cell Signaling Technology, USA) overnight at 4°C. Then, the cells were washed and incubated with Cy3-labeled secondary antibody (1 : 500, Beyotime Institute of Biotechnology, Shanghai, China) for 1 h at 37°C. PI was used for nuclear staining. All slides were viewed directly under a fluorescence microscope (LSM510; Carl Zeiss, Jena, Germany).
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10

Immunofluorescence analysis of MBNL2

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Cells were plated on coverslips, and incubated at 4 °C overnight and exposure to 2.5 μM NBT for 24 h. Then, the cells were fixed with 4% paraformaldehyde/PBS, blocked with 10% BSA in PBS and incubated with antibodies specific for MBNL2 (1:100), followed by Cy3-labeled secondary antibody(Beyotime, Shanghai, China). and then stained with 4′,6-diamidino-2-phenylindole (DAPI). Labeled cells were visualized on an inverted fluorescent microscope (Olympus, Japan).
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