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3 phosphoadenosine 5 phosphosulfate paps

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3'-phosphoadenosine-5'-phosphosulfate (PAPS) is a key metabolic intermediate involved in sulfur transfer reactions. It serves as a sulfate donor in various biosynthetic processes within cells. PAPS is an essential cofactor for enzymes that catalyze the addition of sulfate groups to a wide range of substrates, including hormones, neurotransmitters, and complex carbohydrates.

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16 protocols using 3 phosphoadenosine 5 phosphosulfate paps

1

Hepatic and Intestinal Metabolism Study

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Benzyl alcohol (≥ 98% in purity), adenosine 5’-triphosphate (ATP), 3’-phosphoadenosine-5’-phosphosulfate (PAPS), N-2-hydroxylpiperazine-N’-2-ethanesulfonic acid (HEPES), Trizma base, dithiothreitol (DTT), minimum essential medium (MEM), fetal bovine serum (FBS), penicillin G, and streptomycin sulfate were products of Sigma Chemical Company (St. Louis, MO). Ultrafree-MC 5000 NMWL filter units and cellulose thin-layer chromatography (TLC) plates were from EMD Millipore (Billerica, MA). HepG2 human hepatoma cells (ATCC HB-8065) and Caco-2 human colon adenocarcinoma cells (ATCC HTB-37) from American Type Culture Collection (Manassas, VA). Pooled human lung S9 fraction from a mixed-gender group of 4 donors (Lot No. 0710281), liver cytosol from 50 donors (Lot No. 09103970), small intestine (duodenum and jejunum) S9 fraction from 18 donors (Lot No. 0710351), and kidney S9 fraction from 8 donors (Lot No. 0510093) were obtained from XenoTech, LLC (Lenexa, KS). Ecolume scintillation cocktail and carrier-free sodium [35S]sulfate were from MP Biomedicals, LLC, (Irvine, CA, USA). All other chemicals were of the highest grade commercially available.
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2

Enzymatic Activity Assay for UGT1a1 and SULT1a1

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UGT1a1 and SULT1a1 Supersomes were purchased from Corning (Netherlands). Sulfuric acid (96%), hydrogen peroxide (30%), sodium phosphate dibasic heptahydrate (98%), sodium phosphate monobasic monohydrate (98%), ethanol (95%), sodium hydroxide (98%), glutaraldehyde (25%), (3-aminopropyl)trimethoxysilane (97%), UDP-glucuronic acid (UDP-GA) (98%), 3′-phosphoadenosine-5′-phosphosulfate (PAPS, 60%), resorufin (95%), resorufin β-d-glucuronide (90%), p-nitrophenol (99%) and p-nitrophenyl sulfate (98%), LC-MS grade methanol, LC-MS grade water and triosephosphate isomerase, trifluoroacetic acid (TFA, 99%) were all obtained from Sigma-Aldrich (UK).
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3

Synthesis and Purification of AA-Related Compounds

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AL‐I‐OH and AL‐II‐NOH were synthesized in our laboratory as described (Attaluri et al. 2014), and AA‐I was purified from A. indica by high‐performance liquid chromatography. AA‐related compounds were dissolved in dimethyl sulfoxide (DMSO) at 30–40 mM and stored at −20°C. 2,6‐Dichloro‐4‐nitrophenol (DCNP) was purchased from Tokyo Chemical Industry Co. LTD (Japan). Enzymes used for 32P‐postlabeling analysis were obtained from Worthington (Newark, NJ), New England Biolabs (Ipswich, MA), MP Biomedicals (Solon, OH), and Sigma Aldrich (St. Louis, MO). DMSO, 3′‐phosphoadenosine‐5′‐phosphosulfate (PAPS) (70% purity), salmon sperm DNA (ssDNA), pentachlorophenol (PCP), quercetin, β‐estradiol, 4‐nitrophenol were from Sigma‐Aldrich. PAPS (>90% purity) and 3′‐phosphoadenosine‐5′‐phosphate (PAP) were purchased from R&D Systems (Minneapolis, MN). dG‐AL‐II and dA‐AL‐II containing oligonucleotides were synthesized as described (Attaluri et al. 2010). γ‐32P‐ATP (6000 μCi/mmol) was obtained from PerkinElmer (Boston, MA). Recombinant human SULT1B1 was purchased from MyBioSource Inc. (San Diego, CA).
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4

Characterization of Catalposide Metabolism

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Catalposide (purity, 98%) was obtained from Aobious Inc. (Gloucester, MA, USA). Alamethicin, 3-phosphoadenosine-5-phosphosulfate (PAPS), and uridine 5′-diphosphoglucuronic acid (UDPGA) were from Sigma-Aldrich Co. (St. Louis, MO, USA). 4-hydroxybenzoic acid and 4-hydroxybenzoic acid glucuronide were purchased from Toronto Research Chemicals (North York, ON, Canada). Pooled human intestinal microsomes; pooled human liver S9 fractions; human cDNA-expressed UGTs 1A1/3/4/6/7/8/9/10 and 2B4/7/15/17 supersomes; human cDNA-expressed CESs 1b, 1c, and 2 supersomes; cryopreserved human hepatocytes; and hepatocyte purification kits were obtained from Corning Life Sciences (Woburn, MA, USA). Human cDNA-expressed SULT 1A1*1, 1A1*2, 1A2, 1A3, 1B1, 1C2, 1C4, 1E1, and 2A1 supersomes were purchased from Cypex Ltd. (Dundee, UK). Methanol (HPLC grade) was from Burdick & Jackson Inc. (SK Chemicals, Ulsan, Korea), and all other chemicals were of the highest quality available. Calibration mixtures for Exactive MS [ProteoMass LTQ/FT-hybrid ESI positive mode Cal Mix (MSCAL5) and negative mode Cal Mix (MSCAL6)] were obtained from Supelco (Bellefonte, PA, USA).
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5

Comprehensive Enzymatic Assay Protocol

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Acetaminophen, bufurolol, 1’-hydroxybufurolol, caffeine, dexamethasone, ethoxyresorufin, glutathione (reduced), mephenytoin, 4-hydroxymephenytoin, pentoxyresorufin, resorufin, phenacetin, warfarin, 7-hydroxywarfarin, phenylmethanesulfonyl fluoride, p-nitrophenol (PNP), UDP-glucuronic acid (ammonium salt) (UDPGA), 1-chloro-2, 4-dinitrobenzene (CDNB), 2-mercaptoethanol, 3’-Phosphoadenosine-5’-phosphosulfate (PAPS), flavin adenine dinucleotide, dicoumarol, 2,6 dichlorophenolindophenol, 2-naphthylsulfate, high performance liquid chromatography (HPLC) grade acetonitrile, and methanol were purchased from Sigma–Aldrich (St. Louis, MI, USA). Nicotinamide adenine dinucleotide phosphate (NADPH) and dimethyl sulfoxide were purchased from SRL Pvt. Ltd (Mumbai, Maharashtra, India). Testosterone, 6b-hydroxyTestosterone, chlorzoxazone, and 6-hydroxychlorzoxazone were purchased from Cayman chemical company (USA). Ultrapure water (18.2 M/Ω cm) was obtained from Milli-Q PLUS PF water. All other chemicals were commercially available or HPLC grade.
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6

Resveratrol Bioconjugation and Metabolic Profiling

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Resveratrol was purchased from LKT Laboratories (St. Paul, MN). Formononetin and curcumin were bought from LC Laboratories (Woburn, MA). Resveratrol conjugates were biosynthesized by incubating Resveratrol with MRP2-overexpressing MDCK II cells. Pooled human liver and intestinal S9 fractions were obtained from XenoTech (Lenexa, KS).β-glucuronidases, sulfatase, 3′-phosphoadenosine 5′-phosphosulfate (PAPS), uridine diphosphoglucuronic acid (UDPGA), alamethicin, magnesium chloride and Hanks’balanced salt solution (powder form) were purchased from Sigma–Aldrich (St. Louis, MO). Ora-Plus oral suspending vehicle was obtained from Paddock Laboratories Inc (Minneapolis, MN). The BCA protein assay kit was from Thermo Fisher Scientific (Waltham, MA).
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7

Comprehensive Phytochemical Characterization of ME

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ME was procured from SK Bioland Ltd (Chungnam, Korea) with 14.3 ± 2.0% MGN, 20.6 ± 0.3% HNK and 16.6 ± 0.9% w/w MHNK. ME was authenticated and technical datasheet supplied by the manufacturer. Additionally, we performed thorough in-house LCMS/MS phytochemical characterization and quantification of the active constituents before cell and animal studies. This source of material has been shown to have pharmacological activity in different disease indications in animals in the published literature 31 (link)–33 (link). Baohuoside I was purchased from Chengdu Must Bio-technology Co. Ltd (Chengdu, China). Ammonium acetate, formic acid (LC-MS grade), Uridine-5’-diphosphate-β, D-glucuronic acid ester (UDPGA), 3’-phosphoadenosine-5’-phosphosulfate (PAPS), D-saccharic-1,4-lactone monohydrate, magnesium chloride, magnolol, honokiol were purchased from Sigma (St. Louis, MO). 4-O-methylhonokiol was purchased from LKT Laboratories Inc (Minnesota, USA). Protein assay kit was purchased from BioRad, Hercules, CA. All other materials (typically analytical grade or better) were used as received.
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8

Sulfation of Bioactive Compounds by Recombinant Human SULTs

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Sulfation of the tested compounds by individual sulfotransferases was examined using cytosolic fractions from Escherichia coli expressing recombinant human SULTs 1A1*1, 1A1*2, 1A2, 1A3, 1B1, 1C2, 1C4, 1E1, or 2A1 (Cypex, Dundee, UK). The incubations were performed in 0.2 mL of potassium phosphate–HCl buffer (pH 7.4; 50 mM) containing 5 mM MgCl2, 10 mM dithiothreitol, 50 µM 2,3-dehydrosilybin A or B (in 0.1% (v/v) DMSO), 50 µg/mL E. coli cytosol protein, and 120 µM 3′-phosphoadenosine 5′-phosphosulfate (PAPS; Sigma-Aldrich, St. Louis, MO, USA). Control samples were prepared by incubating the tested compounds in the absence of PAPS and/or the cytosolic fraction. All samples were incubated for 30 min at 37 °C and 300 rpm in a Thermomixer Comfort (Eppendorf, Hamburg, Germany), and then stored at –80 °C until their analysis by UHPLC-MS.
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9

Sulfation of Tested Compounds by Human Enzymes

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Sulfation of the tested compounds was examined using human liver and intestinal cytosols, as well as by using individual human sulfotransferases. Human liver cytosol pooled from 50 donors of mixed gender (H0610.C) and human intestinal cytosol pooled from 13 donors of mixed gender (H0610.IC) were obtained from Sekisui XenoTech (Kansas City, KS, USA). Cytosolic fractions from Escherichia coli expressing recombinant human SULT1A1*1, SULT1A1*2, SULT1A2, SULT1A3, SULT1B1, SULT1C2, SULT1C4, SULT1E1, and SULT2A1 were obtained from Cypex (Dundee, UK). The incubations were performed in 0.2 mL of potassium phosphate–HCl buffer (pH 7.4; 50 mM) containing 5 mM MgCl2, 10 mM dithiothreitol (Sigma-Aldrich, St. Louis, MO, USA), 50 µM tested compounds or silymarin in 0.1% (v/v) DMSO, 100 µg/mL tissue cytosol protein or 50 µg/mL E. coli cytosol protein, and 120 µM 3’-phosphoadenosine 5’-phosphosulfate (PAPS; Sigma-Aldrich, St. Louis, MO, USA). Control samples were prepared by incubating the tested compounds in the absence of PAPS or the cytosolic fractions. After incubation for 30 min at 37 °C and 300 rpm using a Thermomixer Comfort (Eppendorf, Germany), the samples were stored at –80 °C until their analysis by UHPLC-MS.
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10

Synthesis and Purification of OHPCB and PAPS

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All OHPCBs were synthesized and characterized by a previously described procedure [34 (link)]. 3’-Phosphoadenosine-5’-phosphosulfate (PAPS) was purchased from Sigma-Aldrich (St. Louis, MO) and further purified using a published method [35 ]. The final purity of the purified PAPS was greater than 98% as judged by HPLC.3H-DHEA (94.5 Ci/mmol) was purchased from Perkin Elmer Life and Analytical Sciences (Boston, MA). Econo-Safe biodegradable scintillation cocktail and Tris-HCl were purchased from RPI (Mt. Prospect, IL). Hydroxyapatite (Bio-Gel HT) was obtained from Bio-Rad Laboratories (Hercules, CA). The ammonium salt of 8-anilinonaphthalene-1-sulfonic acid (ANS) was from Fluka (Steinheim, Germany), and Tween 20 was obtained from J.T. Baker Chemicals (Phillipsburg, NJ). All other chemicals used were of the highest purity commercially available.
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