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Bicinchonic acid assay

Manufactured by Thermo Fisher Scientific

The Bicinchonic acid assay is a colorimetric detection and quantification method used for the determination of total protein concentration in a sample. It utilizes the reduction of copper ions (Cu2+ to Cu+) by proteins in an alkaline medium, followed by the chelation of the cuprous ions (Cu+) with bicinchoninic acid to produce a purple-colored reaction product that absorbs light at 562 nm.

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6 protocols using bicinchonic acid assay

1

Evaluating Liver eNOS Expression

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The L02 cells or middle right liver tissues of rats were lysed in lysis buffer (Genechem Co., Ltd., Shanghai, China). Lysates were centrifuged at 7,500 × g for 10 min at 4°C, and the supernatant was collected. Total protein levels in supernatant samples were quantified using a bicinchonic acid assay (Thermo Fisher Scientific, Inc.). Samples (50 µg protein) underwent 10% SDS-PAGE. Proteins were then electroblotted onto a polyvinylidene difluoride membranes. The membrane was blocked with 5% fat-free milk at 4°C overnight, followed by incubation with rabbit eNOS primary antibody (1:1,000; cat. no. MAB9028; R&D Systems, Inc., Minneapolis, MN, USA) at 37°C for 2 h. Membranes were washed three times with TBS-T, then incubated at room temperature for 1 h with horseradish peroxidase-conjugated secondary antibodies (1:2,000; cat. no. sc-2065; Santa Cruz Biotechnology, Inc., Dallas, TX, USA). The density of the corresponding bands was measured quantitatively using Image-Pro Plus software, version 6.0 (Media Cybernetics, Inc., Rockville, MD, USA) and corrected by reference to the value for GAPDH (1:1,000; cat. no. NB300-221; R&D Systems, Inc.).
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2

Subcellular Protein Extraction and Immunoblotting

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All cells were briefly rinsed with cold PBS prior to collection. Both whole cells and subcellular fractions were lysed in RIPA buffer (50 mM Tris at pH 7.5, 150 mM NaCl, 0.5% SDS, 0.5% sarkosyl, 0.5% NP40, 20 mM EDTA, Roche protease inhibitors, 1 mM PMSF) on ice. Protein concentrations of lysates were determined by the bicinchonic acid assay (Thermo Fisher) before being analyzed by SDS-PAGE. The primary antibodies used included anti-CARM1 (Cell Signaling Technology, 3379), anti-skp2 (Santa Cruz Biotechnology, sc-7164), anti-LC3B (Cell Signaling Technology, 3868), anti-LAMP1 (Cell Signaling Technology, 3243), anti-C9orf72 (Bio-Rad VMA00065), anti-PARP (Cell Signaling Technology, 9542), anti-β-actin (Santa Cruz Biotechnology, sc-47778), anti-NOX2 (Abcam, ab129068), anti-ubiquitin (Cell Signaling Technology, 3936), anti-calnexin (Cell Signaling Technology, 2679P), anti-ACC (Cell Signaling Technology, 3676), and anti-ADRP (Progen Biotechnik, GP42).
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3

Preparation and Quantification of sEVs

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For studies using sEVs and cell extracts, a known dilution was taken from the stock (unlysed and diluted in dPBS) and lysis performed in buffer (150 mM NaCl, 50 mM Tris pH 7.4, 1% (v/v) Triton X‐100, 1% (w/v) sodium deoxycholate (Sigma‐Aldrich) and cOmplete ULTRA protease inhibitor in ddH2O) on ice for 20 min. Samples were centrifuged at 16,000 × g for 10 min (4°C) and protein concentration of the supernatant determined using the bicinchonic acid assay (Thermo Fisher Scientific). Concentrations of stock samples were obtained by accounting for the dilution of the sample in lysis buffer. Cells and sEVs were then diluted in dPBS to a concentration of 3.25 μg/μl and 5 μl added to αsyn aliquots (for a final concentration of 0.25 μg/μl) and stored at −80°C until experimental use.
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4

Nuclear Extraction of Cardiac Tissue

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The nuclear extraction of the heart tissue and cardiomyocytes was conducted using a commercially available nuclear extraction kit (ThermoFisher Scientific), according to the manufacturer's protocol. The protein concentration of the samples was determined with the Bicinchonic Acid assay (ThermoFisher Scientific).
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5

Western Blot Analysis of Protein Expression

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Rat heart tissues or H9c2 cells were lysed in ice-cold RIPA buffer (Pierce), and were then centrifuged at 12000 rpm for 20 minutes at 4°C. Bicinchonic acid assay (Thermo Scientific) was used to measure protein content. Proteins (30 μg) were resolved on 10-12% SDS-polyacrylamide gel using TGX stain free kit (Bio-Rad). After electrophoresis, proteins were blotted on to polyvinylidine difluoride (PVDF) membrane (Merck Millipore). Membrane was blocked in 3% non-fat dry milk in TBST (0.1% Tween 20) or 5% BSA solution at room temperature for an hour, followed by incubation with desired primary antibody overnight at 4°C. After three washes with TBST, membrane was incubated with appropriate HRP-labeled secondary antibody at room temperature for an hour. Membrane was washed with TBST (thrice for 5 min each) and the blot was visualized using Gel Doc XR system (Bio-Rad), using Roche Lumi Light substrates (Thermo Scientific). Protein expression was normalised to corresponding stain free gel (BioRad TM ) loading controls' expression.
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6

Intracerebral Injection of SOD1 G93A Aggregates

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For intracerebral injection of SOD1 G93A aggregates, brainstem tissue from transgenic B6SJL-Tg(SOD1*G93A)1Gur/J mice (Jackson Laboratory, Ben Harbor, ME) at terminal disease stage was sonicated in phosphate-buffered saline (PBS). As control, brainstem tissue from nontransgenic age-matched littermates was used. After centrifugation for 15 minutes at 14,000 Â g, protein concentration of the supernatant was determined using a bicinchonic acid assay (Thermo Scientific, Rockford, IL) and adjusted to 5 mg/mL of protein. The PFFs were generated from recombinant human a-synuclein protein with a purity of >95% (a gift from Boehringer Ingelheim Pharma GmbH & Ko. KG, Biberach an der Riss, Germany). a-Synuclein was reconstituted in fibril assembly buffer (50 mmol/L Tris, 100 mmol/L NaCl, pH 7.0) at a concentration of 5 mg/mL and 200 mL per tube of the solution and was incubated in an orbital shaker at 37 C and 1000 rpm for 5 days as previously described. 19 Both aggregate-containing preparations were aliquoted and stored at À80 C.
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