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Synergy h1m

Manufactured by Agilent Technologies
Sourced in United States

The Synergy H1M is a multimode microplate reader from Agilent Technologies. It is designed to perform a variety of common microplate-based assays, including absorbance, fluorescence, and luminescence detection. The Synergy H1M offers a compact, flexible, and reliable solution for basic life science and biochemical research applications.

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94 protocols using synergy h1m

1

AHL-Regulated Gene Expression in E. coli

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TX-TL was prepared as previously described. 9 All experiments were conducted at 5uL total volume. Plates were read in a BioTek Synergy H1M with excitation wavelength of 485nm and emission wavelength of 515nm for deGFP.
In vivo: JM109 cells were transformed with both a plasmid constitutively expressing activator plasmid (p15a chloramphenicol) and a plasmid with the AHL promoter regulating GFP expression (colE1 kanamycin). Three colonies from each plate were inoculated into LB containing chloramphenicol (34ug/mL) and kanamycin (50ug/mL) overnight. Cultures were then diluted 1:100 fold and grown until mid-log phase (0.3-0.6 OD600). Cultures were then diluted into M9 media containing 1% glucose and 1uM of the appropriate AHL, or 0.1% DMSO as a negative control. Cells were grown in 96 well plates in an BioTek Synergy H1M. Cells were grown at 37°C.
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2

High-throughput E. coli Transformation Assay

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All experiments were performed in E. coli TG1 cells [F′ traD36 lacIq Δ(lacZ) M15 pro A+B+/supE Δ(hsdM-mcrB)5 (rk mk McrB-) thi Δ(lac-proAB)]. Plasmid combinations were transformed into chemically competent TG1 cells, plated on LB + Agar plates containing 100 µg/mL carbenicillin and 34 µg/mL chloramphenicol, and incubated overnight ∼17 h at 37°C. The plates were taken out of the incubator in the morning and left at room temperature for ∼7 h at which point three colonies were picked to inoculate 300 µL of LB containing carbenicillin and chloramphenicol at the concentrations above in a 2-mL 96-well block (Costar 3960). Cultures were grown overnight, ∼17 h at 37°C at 1000 rpm in a Labnet Vortemp 56 benchtop shaker. Four microliters of this overnight culture were then added to 196 µL (1:50 dilution) of supplemented M9 minimal media (1×M9 minimal salts, 1 mM thiamine hydrochloride, 0.4% glycerol, 0.2% casamino acids, 2 mM MgSO4, 0.1 mM CaCl2) containing the antibiotics above and grown for 3 h at the same conditions as the overnight culture. One hundred microliters of this culture were then transferred to a 96-well plate (Costar 3631) containing 100 µL of phosphate buffered saline (PBS). Fluorescence (FL) (485 nm excitation, 520 nm emission) and optical density (OD 600 nm) were measured using a Biotek Synergy H1M plate reader.
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3

Electrical Field Effects on PEM Stability

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Electrical fields were applied vertically and horizontally to PEMs to investigate their effects on destabilizing PEMs. For the vertically electrical field treatment, conductive PPy films were used as working electrodes. After filling PBS into the wells without bubbles, stainless steel was placed on the top of the wells as counter electrodes (Figure 1c). Regarding the horizontally electrical field treatment, electrodes were placed at two opposing ends of the conductive PPy films (Figure 1d).
After electrical field pretreatment, the dissolutions of DNA and PEI from PEMs in PBS were evaluated at different time points. Because amines of PEI can react with TNBSA to form chromogenic products, 20 μL of TNBSA (0.01 vol% in sodium bicarbonate buffer, pH 8.5) was added to 40 μL of samples [27 (link)]. After 1.5 h incubation at 37 °C, 20 μL of 10% SDS aqueous solution and 10 μL of 1 N HCl was added to terminate the reaction. The absorbance at 335 nm was determined by spectrometry (Synergy H1m, Biotek, Winooski, VT, USA), which were compared to the calibration curve determined by the results of standard PEI solutions to calculate the release of PEI. For DNA evaluation, samples were directly measured at the absorbance of 260 nm because PEI does not contribute any absorption at this wavelength [14 (link)].
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4

Quantifying Oxidative Stress Markers

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Oxidative stress in the penile tissue was assessed quantitatively by measuring 8-hydroxy-2-deoxyguanosine (8-OHdG) and superoxide dismutase (SOD) levels using species-specific 8-OHdG and SOD immunoassay ELISA kits (R&D Systems Europe, Abingdon, UK) according to the manufacturer’s instructions. The absorbance was read at a wavelength of 450 nm in a microplate reader (Synergy H1 M; Biotek, Winooski, VT, US). At least three separate plates of cells were assayed for each clone.
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5

Quantification of Inflammatory Cytokines in Prostate

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We quantified the expression of IL-1β, IL-6, and IL-8 by species-specific immunoassay ELISA kits (R&D Systems Europe, Abingdon, UK) according to the manufacturer's instructions. Absorbance was read at a wavelength of 450 nm in a microplate reader (Synergy H1 M; BioTek, Winooski, VT, USA). The prostates of each group were stained with hematoxylin and eosin (HE; Sigma, St. Louis, MO, USA) according to the manufacturer's instructions. After ESHT, prostates were collected and stored at −80℃ until use. Digital images were obtained using a Zeiss LSM 510 Meta confocal microscope (Zeiss).
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6

Quantifying GLP-1 Receptor Activation

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cAMP response element (CRE)-driven GFP assay was performed with RIN-m5f/CRE-GFP cells that harbor the CRE-GFP cassette. Protein A-purified GLP-1-Fc was compared with Trulicity (dulaglutide, 0.75 mg/0.5 mL, Eli Lilly). Briefly, exponentially growing RIN-m5f/CRE-GFP cells were stimulated (in triplicate) with either serially diluted dulaglutide or GLP-1-Fc for 6 h. GFP was measured with a fluorescence plate reader (Synergy H1M, Biotek) at an excitation wavelength of 488 nm and an emission wavelength of 525 nm. The four parameter logistic equation was used to determine the EC50 value.
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7

Strand Displacement Reactions in Y-Scaffold Condensates

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All sequences for strand displacement reactions are designed using a seesaw compiler (71 (link)). The reactions in the solution phase were measured using a hybrid multimode microplate reader (Synergy H1M, BioTek). For strand displacement reactions in the Y-scaffold condensates, all reaction components except an input strand were preincubated with the condensate solution typically for an hour before the addition of the input. Individual reaction components (100 nM) are used together with 1.5 μM scaffolds. The reactions were performed in 350 mM NaCl buffer at 30°C.
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8

Evaluating Antioxidant Potential of Plant Extracts

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The method for determining the radical scavenging activity of the ME using 2,2-diphenyl-1 picrylhydrazyl (DPPH) was adapted from Chaiwong et al. [38 (link)]. In summary, 2 mL of 0.5 mmol/L DPPH dissolved in methanol was combined with 100 µL of varying concentrations of ME (0.0312, 0.0625, 0.125, 0.25, 0.5, and 1 mg/mL). After 30 min of incubation in the darkness, the absorption at 517 nm was measured using a 96-well microplate reader (Synergy H1M, Bio-Tek, Winooski, VT, USA). DPPH is a stable purple free radical, and when antioxidant compounds scavenge free radicals, the color changes to a pale yellow, which can be detected by the microplate reader. The percentage of DPPH radical scavenging activity was calculated using Equation (2) prior to plotting the IC50 against the corresponding concentrations.
% DPPH radical inhibition=(A517 conA517 sam)A517 con×100
where A517 con is the absorbance of the control reaction (containing all reagents except the test compound), and A517 sam is the absorbance of the tested sample. Scatter diagrams were plotted, and linear regression was estimated. The IC50 value, which corresponds to the concentration causing 50% inhibition of DPPH, was determined through calculations.
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9

Cell-Free Fluorescent Protein Assay

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Batch TXTL reactions were prepared
in total volumes of 10 μL and transferred to 384-wells Nunc
plates. The reactions were incubated at 29 °C and eGFP and optionally
eCFP fluorescence was measured on a Saffire II (Tecan), Spark 10 M
(Tecan), or Synergy H1M (Biotek) plate reader for at least 14 h. The
plate readers were calibrated using a titration range of purified
eGFP protein. For the composite CFFL, where there are two outputs,
eGFP and eCFP concentration ranges were measured in both the eGFP
and eCFP measurement channels to determine the crosstalk between the
two measurements.
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10

Nanoparticle Optical Characterization

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Absorbance and fluorescence spectra of purified nanoparticles were determined by using a multiplate reader Synergy H1 M (Biotek) at room temperature. Emission spectra were obtained after excitation at 365 nm and recorded in the range of 400–700 nm.
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