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Calbiochem

Manufactured by Merck Group
Sourced in Germany, United States

Calbiochem is a brand of laboratory equipment and reagents manufactured by Merck Group. It is designed for use in various scientific applications, including biochemistry, molecular biology, and cell biology research. Calbiochem products are known for their quality, reliability, and consistent performance.

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19 protocols using calbiochem

1

Synthesis and Purification of Lactide and Caprolactone

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l-Lactide was
synthesized from l-lactic acid (Jungbunzlauer, 88%) and purified
by repeated recrystallization from ethyl acetate and dried to a constant
weight in a vacuum oven at 55 °C. The obtained pure l-lactide monomer was a white crystalline solid with a purity ≥99.5%
(from DSC purity analysis). Commercial ε-caprolactone (Acros
Organics, 99%) was purified by vacuum distillation over calcium hydride.
Anhydrous tin(II) chloride (purity > 98%) was purchased from Acros
Organics (95%) and used as received. N-Heptane (Carlo
Erba Reagents, 99%), diethylamine (Sigma-Aldrich, ≥99.5%),
and n-butanol (QRëC, 99.95%) were purified
by refluxing with Na metal or CaH2 and distilled before
use. Calcium stearate (CaSt, Sigma-Aldrich, 6.6–7.4% Ca basis),
acetone (Sigma-Aldrich, ≥99.5%) coating solutions, and levofloxacin
antibiotic drug (LVFX, Sigma-Aldrich, ≥99.5%) were used as
received. Phosphate-buffered saline (PBS) solution, pH 7.4, was prepared
by dissolving a tablet of PBS buffer (Calbiochem, Sigma-Aldrich) in
1 L of deionized H2O. P. aeruginosa, S. aureus (MRSA), and E. coli O157:H7 (American Type Culture Collection
(ATCC), Manassa, VA), and Mueller–Hinton agar (MHA, Sigma-Aldrich)
were used as received.
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2

Kinetics of IAPP Aggregation Monitored

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All samples were prepared in low-binding tubes (Axygen) on ice. Monomeric IAPP in 35 mM acetate buffer pH 5.3 was mixed with a 2.5 M stock solution of KCl and a 2 mM stock solution of ThT (CalBiochem, purchased from Sigma-Aldrich, Product code 596,200, dissolved in H2O and filtered through a 200 nm filter and concentration determined using absorbance) to a final concentration of 33 mM acetate, 150 mM KCl, pH 5.3, 20 µM ThT. Solutions were pipetted into wells of a 96-well Half Area Black/Clear Flat Bottom PEGylated Polystyrene plate (Corning® 3,881), 80 µl per well in triplicates. The ThT fluorescence was monitored through the bottom of the plate over time as a reporter of the amount of aggregates formed using a plate reader (FLUOstar Omega, FLUOstar Galaxy or FLUOstar, BMG Labtech) equipped with 440 nm excitation filter and 480 nm emission filter.
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3

Quantification of Autophagy Markers in Podocytes

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Total proteins in podocytes were extracted by RIPA buffer containing phosphatase inhibitors (Calbiochem, Merck Millipore, USA) and protein inhibitors (Roche Applied Science, Mannheim, Germany). Bradford assay (Bio-Rad Laboratories, Munich, Germany) was used to assess protein concentration. Equal amounts of proteins were denatured after heating at 95°C for 5 min and separated by 4–12% SDS-PAGE. PVDF membrane (Bio-Rad) after transferring was incubated with primary antibody and secondary antibody. Eventually the results were visualised using chemiluminescence substrate (Perkin Elmer, Massachusetts, USA). The ChemiDoc MP system (Bio-Rad) was used to capture images. The expression of proteins was analysed with the Image J software. Rabbit anti-human LC3, Atg5, p-mTOR, T-mTOR, p-p70S6K, p70S6K, p-4E-BP1, 4E-BP1, p-AMPK, AMPK, p62, GAPDH and goat anti-rabbit IgG-HRP linked antibody (Cell Signaling Technology, Massachusetts, USA) have been used with a 1∶1000 dilution.
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4

Fibrin Hydrogels with Embedded Dextran Beads

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The model tissue hydrogels investigated are fibrin networks with stiff dextran beads embedded, as described previously [5 (link)]. To prepare fibrin gels, fibrinogen (CalBioChem, EMD Millipore, Billerica, MA USA) was dissolved in T7 buffer (50 mM Tris, 150 mMNaCl, pH 7.4). Thrombin isolated from salmon plasma (seaRun Holdings, Freeport, ME, USA) is diluted in ddH2O at 1000 units per millimeter. Fibrinogen, thrombin, and CaCl2 were combined in 1X T7 buffer to yield a final solution of 10mg/ml fibrinogen, 30 mM Ca2+ and 2 U ml thrombin.
Fibrin networks embedded with volume-conserving beads were prepared with cross-linked dextran beads (Sephadex G-25 medium, GE Health Sciences), as previously described [5 (link)]. The beads are swollen with ddH20 to accomplish 92% swelling and are approximately 50–150 microns in diameter. Bead concentrations of 1vol% or 20vol% are used for the fiber hydrogels and fiber-bead hydrogels, respectively. To keep the concentration of fibrin, thrombin, and CaCl2 consistent, the extra volume % from dextran beads in the 20% case is accounted for by reducing the T7 buffer. The solution of fibrin, T7 buffer, CaCl2, and beads are pipette-mixed before thrombin is added to reduce the effect of sedimentation of the beads. Some of the T7 buffer (~30 mL) is added to the thrombin prior to mixing in the final hydrogel solution to prevent heterogeneous gel formation.
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5

Antibodies for Insulin Signaling Pathway

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The antibodies against phospho-(p)-(Ser21) glycogen synthase kinase α (GSK3α), total and p(Ser9)-GSK3β, total and p(Ser473)-Akt, were purchased from Cell Signaling Technologies (Danvers, MA, USA). The antibodies against the β chain of the insulin receptor (IR) and the insulin-like growth factor receptor (IGF-1R) were purchased from Santa Cruz Biotechnology (Santa Cruz, California, USA). The antibody against total GSK3α was obtained from UpState (Lake Placid, NY) and the antibody against β-actin was bought from BioLegend (San Diego, CA). The guinea-pig anti-CB1R antibody was obtained from Frontier Institute co., ltd. (Hokkaido, Japan), and we have tested its selectivity before (Bitencourt et al., 2015 (link)). The chemifluorescence (ECF) reagent was acquired from GE Healthcare (Chalfont St. Giles, UK). 2-deoxy-2-(3-(methyl-3-nitrosoureido)-D-glucopyranose (streptozotocin or STZ) and other unspecified (in)organic reagents were from Merck (formerly, Calbiochem, Sigma-Aldrich, Merck-Millipore Corporation; Darmstadt, Germany).
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6

Apoptosis Quantification in Cells Treated with PKHB1

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Annexin‐V‐allophycocyanin (Ann‐V‐APC 0.1 μg/mL; BD Pharmingen, San Jose CA, USA), propidium iodide (PI, 0.5 μg/mL; Sigma‐Aldrich), and tetramethylrhodamine ethyl ester (TMRE, 20 nmol/L; Sigma‐Aldrich) were used for phosphatidylserine exposure, cell viability, and mitochondrial transmembrane potential (ΔΨm) quantification, respectively, in a BD Accuri C6 flow cytometer (BD Biosciences, Franklin Lakes, NJ, USA) (total population 10 000 cells). Data were analyzed using FlowJo software (LLC, Ashland, OR, USA). Then, 1 × 106 cells/mL were treated for 2 hours with PKHB1 (as indicated). For the inhibition assays, calcium chelator, BAPTA (5 mmol/L, CalbioChem; Merck, Billerica, MA, USA) or the pan‐caspase inhibitor Q‐VD‐OPh (QVD, 10 μmol/L; BioVision, Milpitas, CA, USA) was added 30 minutes before PKHB1.
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7

Western Blot Quantification of TH and Actin

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Tissues were homogenized at 4°C in ice-cold lysis buffer with phosphatase and protease inhibitor. Twenty-five µg of proteins were incubated for 1 h with a mouse monoclonal anti-TH (1:10000, Sigma Aldrich, Cat# T1299 RRID:AB_477560; lot n°: 015M4759V) or a mouse monoclonal anti β-Actin (1:50000, Sigma Aldrich, Cat# A5441 RRID:AB_476744, lot n°: 028K4826) antibodies and then with secondary peroxidase coupled anti-mouse antibody (1:3000; Merck Millipore, Calbiochem®, Cat# 401215-2ML RRID:AB_437766; lot n°: 2782376). Immunostaining was revealed by enhanced chemiluminescence luminosity (GE Healthcare, Milan, Italy). Densitometric analysis was performed with ImageJ software.
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8

Optimized MALDI-TOF Mass Spectrometry Protocol

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MALDI-TOF mass spectra of the samples were recorded by using a Bruker Ultraflextreme MALDI-TOF workstation controlled by FlexControl (Bruker Daltonics, Bremen, Germany) equipped with a Smartbeam II laser (Bruker Daltonics) of 355 nm and operating in negative mode. The following settings were used: laser frequency, 2,000 Hz; smart beam, ‘4_large'; sample rate and digitizer settings, 1.25 GS/s; accelerator voltage, 20.07 kV; extraction voltage, 18.87 kV; lens voltage, 5.58 kV; and delayed extraction, 250 msec. 1,000 laser shots were used for each individual spectrum, and a minimum of 10 individual spectra was cumulated and saved. MS spectra were calibrated externally using a ganglioside mixture (ammonium salt, bovine brain) Calbiochem, Merck KGaA, Darmstadt, Germany, which results in optimal spectra for both MS and MS/MS analysis. FlexAnalysis, version 3.3 (Bruker Daltonics) was used for data processing. The desalted sample (1.0 mL) was spotted on MTP 384 polished steel BC targets (Bruker Daltonics). Samples were overlaid with 2,5-Dihydroxybenzoic acid (2,5-DHB) (1.0 mL) and left for drying (dried droplet method). Matrix solubilization procedure included dissolution of 2,5-DHB (20 mgxmL−1) in a mixture of water/methanol/acetonitrile (6 : 1 : 3, vol/vol/vol) with/without the addition of 0.1% HCOOH or trifluoroacetic acid (TFA), respectively.
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9

Immunolabeling of Subcellular Markers

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The following primary antibodies were used: anti-RFP (MBL, rabbit, #PM005), anti-GM130 (BD Biosciences, mouse, 1:500), anti-transferrin receptor (Zymed, Thermo Scientific Pierce, Waltham, MA, #13-6800, 1:300), anti-synapsin (Chemicon, EMD Millipore, Temecula, CA, mouse, 1:500), anti-Bassoon (Synaptic Systems, Goettingen, Germany, Guinea Pig, 1:300), anti-GFP (Sigma-Aldrich, St. Louis, MO, rabbit, 1:5000), anti-GluR1 (Millipore, EMD Millipore, Billerica, mouse; CalBioChem, Merck Millipore, Temecula, CA, rabbit). Dynasore was from Sigma (D7693); Sulfo-NHS-SS-biotin was from Pierce.
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10

Chronic Renal Failure in Angiotensin II-Induced Rats

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Experimentally, chronic renal failure in male Sprague–Dawley (SD) rats was induced by angiotensin II (ANG II) infusion (450 ng/min/kg, Merck, Calbiochem®), via subcutaneous osmotic minipumps for 14 days (Alzet model 2002). Under ANG II infusion, SD rats develop progressive kidney structural alterations (interstitial fibrosis and glomerulosclerosis) and kidney functional changes (polyuria, proteinuria, and an impaired glomerular filtration rate). In this study, male SD rats (Harlan) were weighing ca. 260 g before the pump implantation, corresponding to approximately 12 weeks of age. The minipumps were preincubated in vitro in 0.9% saline at 37 °C for 14 h before surgical implementation. Pumps were placed into the subcutaneous space of isoflurane anesthetized rats through a small incision in the flank. Treatment started 1 day after implantation of the osmotic minipump. Before treatment, rats were randomized into five groups (n = 12/group) according to body weight and were treated orally, per oral gavage, either with placebo (vehicle, 2 ml/kg, once daily) and runcaciguat given per oral gavage (0.3, 1.0, and 3.0 mg/kg/bid) for a total of 13 consecutive days. In parallel, naïve SD rats served as sham (control) and were treated with vehicle. The body weight of all animals was recorded daily (File Nr WDPOS11/21).
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