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Rotor gene q qrt pcr instrument

Manufactured by Qiagen

The Rotor Gene Q qRT-PCR instrument is a real-time PCR cycler designed for quantitative reverse transcription PCR (qRT-PCR) analysis. It features a unique rotary sample system that allows for fast and efficient thermal cycling.

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2 protocols using rotor gene q qrt pcr instrument

1

Quantitative gene expression analysis in MSCs

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qPCR was used for gene expression studies to determine pluripotency (Oct3/4, Sox2, and Nanog), apoptosis (Bax, Bak, p53, Bcl2, and Birc), differentiation (FABP4, PPARγ, ON, OCN, COL2, and COL10A1), and the expression of hypoxia-related genes (GLUT1, LDHA, LOX, and PGK1). Three replicates of each sample were analyzed by qPCR. Relevant primer information is displayed in Table S2. The total RNA was extracted using an RNeasy Minikit (Qiagen, CA, USA) and quantified using an OPTIZEN 3220 UV BIO spectrophotometer (Mecasys, Sungnam, Korea). Next, cDNA synthesis was performed from 1 μg total RNA using an Omniscript Reverse Transcription Kit (Qiagen) with a oligo dT primers at 60°C for 1 h. qRT-PCR was performed using a Rotor Gene Q qRT-PCR instrument (Qiagen) with Rotor-Gene 2× SYBR Green mix (Qiagen), 2 μL cDNA per reaction, and 0.5 mM forward and reverse primers. The qPCR program settings included of pre-denaturation (95°C for 10 min), 45 PCR cycles (95°C for 10 s, 60°C for 6s, and 72°C for 4 s), melting curve analysis (60°C to 95°C ramp, 1°C per seceond ramp rate) and cooling (40°C for 30 s). Transcript levels of all target genes were normalized against those of TBP, which is a stable reference gene in human MSCs [12 (link)].
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2

Quantitative Transcriptome Analysis of Blastocysts

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Gene expression analysis was performed with minor modifications to a previously described protocol (Lee et al., 2017) . Briefly, total RNA was extracted from pools (five replicates) of three blastocysts using the RNeasy Micro Kit (Qiagen, Hilden, Germany) and residual genomic DNA was removed through RNase Free DNase (Qiagen) treatment for 15 min in room temperature. Since a low amount of total RNA was extracted from the 3 blastocysts which was below the usable concentration range of the UV spectrophotometer, RNA could not be quantified. The RNA was converted to cDNA using the Sensiscript Reverse Transcription Kit (Qiagen). Quantitative RT-PCR was carried out on a Rotor Gene Q qRT-PCR instrument (Qiagen) with RT2 SYBR Green ROX qPCR Mastermix (Qiagen) combined with 2 μL of cDNA and 0.5 μM forward and reverse primers (Table 1). Amplification was carried out using the following conditions: 95℃ for 10 min; 40 cycles at 95℃ for 15 s and 60℃ for 60 s; 60℃ to 95℃ at 1℃/s; 40℃ for 30 s. Ct values were analyzed using the Rotor-Gene Q Series Software (Qiagen) and Succinate dehydrogenase complex, subunit A was used for relative quantification of transcript levels.
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