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4 protocols using palb2

1

Multiprotein DNA Repair Complex Characterization

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Actin (Santa Cruz, sc-1616); BLM (Bethyl, A300-110A); RMI1 (Bethyl, A300-631A); TOP3A (ProteinTech, 14525-1); ATR (Santa Cruz, sc-1887); Chk1 (Santa Cruz, sc-8408); PolD3 (Abnova, H00010714-M01); PolD1 (Bethyl, A304-005A); PolH (Bethyl, A301-231A); BRCA1 (EMD/Calbiochem, OP92); BRCA2 (EMD/Calbiochem, OP95); PALB2 (Bethyl, IHC-00251); Rad51 (Santa Cruz, sc-8349); Rad52 (Santa Cruz, sc-365341); Mre11 (Novus, NB100-142); Smc5 (Bethyl, A300-236A); Smc6 (Bethyl, A300-237A); FANCD2 (Novus, 100-182); RNas H1 (ProteinTech, 15606-1); mCherry (GeneTex,GTX128508), GAPDH (Cell Signaling, #2118). Myc (Santa Cruz, sc-40). Antibodies recognizing FANCM, FAAP24, MHF1, and MHF2 are generously provided by Dr. Xiaodong Wang. The antibody recognizing CtIP was generously provided by Richard Baer.
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2

Western Blot Analysis of DNA Damage Response Proteins

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Nuclear extracts were obtained using the NE-PER Nuclear and Cytoplasmic Extraction Kit (Thermo Scientific) and whole cell extracts were generated using RIPA buffer with protease and phosphatase inhibitors added. Proteins were separated by sodium dodecyl sulphate (SDS)-polyacrylamide gelelectrophoresis and transferred to a polyvinylidene fluoride (PVDF) membrane. Membranes were blocked with 5% nonfat milk in phosphate-buffered saline tween 20 (PBST) at room temperature for 1 h. Primary antibodies were incubated overnight at 4° and horseradish peroxidase (HRP)-conjugated secondary antibodies were incubated for 1 h at room temperature. The following primary antibodies were used: BRCA1 (EMD Millipore, catalog# OP92), RNF168 (EMD Millipore, #06-1130-I), Tubulin (Cell Signaling, catalog# 2148), GFP (Santa Cruz Biotechnology, catalog# sc-9996), RFP (ChromoTek, catalog# 6g6-20), FLAG (Cell Signaling, catalog# 14793 and Sigma Aldrich, catalog# F1804), phospho-Chk1 (Cell Signaling, catalog# 2344), Chk1 (Cell Signaling, catalog# 2360), POLD3 (Bethyl Laboratories, A301-244A), PALB2 (Bethyl Laboratories, catalog# A301-246A), BRCA2 (Bethyl Laboratories, catalog# A303-435A), RAD51 (Santa Cruz Biotechnology, catalog# sc-8349), RAD18 (Bethyl Laboratories, catalog# A301-340A), 53BP1 (Cell Signaling, catalog# 4908).
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3

Immunoblot Analysis of DNA Repair Proteins

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The immunoblots were done as described previously (Lee et al., 2010 (link); Moskwa et al., 2011 (link)) with BRCA1 (#OP92; Calbiochem, Billerica, MA), BRCA2 (#ab16825-100; Abcam, Cambridge, MA), RAD51 (#sc-8349; Santa Cruz), MDC1 (#sc-27737; Santa Cruz), PalB2 (#A301-246A; Bethyl, Montgomery, TX), BRIP1 (#4578S; Cell Signaling), Exo1 (#sc-19941; Santa Cruz), H2AX (#2595S; Cell Signaling), and γ-H2AX (#9718S; Cell Signaling) antibodies and α-tubulin (#T5168; Sigma, St. Louis, MO) antibodies.
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4

Western Blot Analysis of DNA Repair Proteins

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Primary antibodies against p53 (Cell Signaling Technology, 9282), pRb (BD Pharmingen, 554136), FancD2 (Santa Cruz Biotechnology, FI17, sc-20022 or Abcam, ab2187), FancI (Santa Cruz Biotechnology, A-7, sc-271316), Phospho-Ser556 FancI and Phospho-Ser565-FancI (gifts from Ronald Cheung, Toshiyasu Taniguchi lab), pH2AX (Millipore, 05–636), Rad51 (Cosmo Bio Co. Ltd, 70–001), Palb2 (Bethyl Laboratories, A301-246A), Palb2 (a gift from Bing Xia, Rutgers Cancer Institute), Phospho-ATR (Ser428) (Cell Signaling Technology, 2853), Phospho-Chk1 (Ser345) (133D3) (Cell Signaling Technology, 2348), ATR (Cell Signaling Technology, 2790), CHK1 (2G1D5, Cell Signaling Technology, 2360), PCNA (PC10) (Cell Signaling Technology, 2586), Ubiquityl-PCNA (Lys164) (Cell Signaling Technology, 13439), UHRF1 (Santa Cruz Biotechnology, H-8, sc-373750), USP1 (C-term; a gift from Tony Huang, NYU School of Medicine), Cyclin A (in-house, Clurman lab), Beta actin (GeneTex, GTX110564 or Cell Signaling Technology, 5125), Vinculin (Sigma, V9131), and Histone H3 (Abcam, ab1791), GAPDH (14C10, Cell Signaling Technology, 2118)were used. Secondary antibodies were conjugated with horse radish peroxidase (mouse or rabbit, Cell Signaling Technology) or appropriate Alexa Fluor (Molecular Probes) were used.
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