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9 protocols using il 17a

1

Quantitative RT-PCR Analysis of Lung Cytokines

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RNA from sections of lung tissue was isolated by homogenization in TRIzol (Invitrogen) followed by phenol-chloroform extraction and isopropanol precipitation. cDNA was generated per standard protocol with Superscript reverse transcriptase (Invitrogen) and used as input for real-time PCR. Real-time PCR data were analyzed using the ΔΔCT method using SYBR Green chemistry (Applied Biosystems), with βNA fro serving as the endogenous housekeeping gene. All reactions were run on an ABI 7500 Fast Real-Time PCR System (Applied Biosystems). Samples were normalized to naïve controls. The following QuantiTech primer assays from Qiagen were used: Areg (QT00112217), IL-4 (QT00160678), IL-5 (QT00099715), IL-10 (QT00106169), IL-13 (QT00099554), IL-17a (QT00103278), IL-25 (QT00134645), IL-33 (QT00135170), Mcpt8 (QT00131565), Muc5ac (QT01161104), Nmb (QT00105945), Nmbr1 (QT00312494), Nmu (QT00133091), Nmur1 (QT00174006), and Tslp (QT00198261).
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2

Quantitative Gene Expression Analysis

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Total RNA was isolated from cell suspensions using Trizol LS Reagent (Life Technologies). RNA was converted to cDNA using gb Reverse Transcription Kit (Generi-Biotech, Czech Republic). Equal amounts of cDNA were analyzed by Real-Time quantitative PCR using gb Elite PCR Master Mix (Generi-Biotech, Czech Republic) on a LightCycler® 480 Real Time PCR System (Roche). Relative quantifications were performed using the comparative CT method with normalization to GAPDH and results expressed as fold difference relative to a relevant control sample. Primers and probes were from Qiagen: GAPDH (Mm99999915_g1), IL-17A (Mm00439618_m1), IFN-γ (Mm01168134_m1), IL-4 (Mm00445259_m1), TGF-β (Mm01178820_m1), IL-6 (Mm00446190_m1), IL-12 p35 (Mm00434165_m1).
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3

Serum Cytokine Profiling by ELISA

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Whole blood samples were allowed to clot for 15–30 min after collection by cardiac puncture. Serum was then separated by centrifugation at 3,000 rpm for 10 min at 4°C and stored at −80°C until use. Serum levels of IL-6, IL-1β, and IFN-γ were measured using enzyme-linked immunosorbent assay kits specific for these cytokines according to manufacturer instructions (BD Biosciences). For the ELISArray, serum samples for each group were pooled (5–10 per group). A multi-analyte ELISArray for the following cytokines was carried out per manufacturer instructions: IL-2, IL-4, IL-5, IL-6, IL-10, IL-12, IL-13, IL-17A, IL-23, IFN-γ, TNF-α, and TGF-β1 (QIAGEN, Germantown, MD, USA). In instances in which serum volumes were insufficient to measure all 12 cytokines, the IFN-γ well was not used and has been omitted from our analysis.
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4

RNA Isolation and qPCR Analysis

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Total RNA was isolated from lumbar spinal cords using RNeasy Mini kit (Qiagen) according to the manufacturer’s instructions and stored at −80 °C. The concentration and purity of RNA were determined by measuring absorbance at 260/280 nm using a nanodrop spectrophotometer (Thermo Fisher Scientific). First strand cDNA synthesis was performed with 1 μg total RNA using miScript II RT Kit (Qiagen) for mRNA expression analyses according to the manufacturer’s instructions. Real time PCR was performed using QuantiFast SYBR Green master mix (Qiagen) and Quantitect Primers: Il10 (Qiagen,QT00106169); Il17a (Qiagen, QT00103278); Il1a (Qiagen, QT00113505); Arg1 (Qiagen, QT00134288); NOS2 (Qiagen, QT01547980); Il2 (SA Biosciences, PPM03020E); Actb (Qiagen, QT00095242) and Gapdh (Qiagen, QT01658962) with the following cycling conditions: 95 °C for 5 min, 40 cycles of denaturation at 95 °C for 30 s, annealing at 60 °C for 30 s and extension at 72 °C for 30 s. βactin and Gapdh housekeeping genes were used to normalize mRNA expression. The relative expression levels were analyzed by 2-ΔΔct method.
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5

Fetal Lung Explant Culture Assay

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Embryonic day 16 fetal mouse lungs were minced into 0.5–1.0 mm3 pieces. Explants were placed onto polyethylene hanging insert filters (0.4 μm, EMD Millipore Corp, Billerica, MA) in 12-well plates and were cultured in the presence or absence of recombinant mouse TNF-α (50 ng/ml) and IL-17a (100 ng/ml), both from Peprotech, (Rocky Hill, NJ), for 72 h. Total RNA was extracted using RNeasy Plus Micro kit (Qiagen, Valencia, CA). Gene expression was analyzed by RT-qPCR. Selected explants were fixed in 4% paraformaldehyde overnight and stained with fluorescently labeled, monoclonal antibody specific for α-smooth muscle actin (Sigma-Aldrich).
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6

Quantitative Analysis of Inflammatory Markers

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Total RNA was isolated from intestinal colon tissues using RNAiso Plus reagent (Takara, Shiga, Japan), and cDNA was synthesized using ReverTra Ace qPCR RT Master Mix (Toyobo, Osaka, Japan). Quantitative RT-PCR was performed using EvaGreen qPCR Mastermix (Applied Biological Materials, Richmond, Canada), and the results were normalized to GAPDH expression. Primers for IFN-γ (QT01038821), IL-6 (QT00098875), IL-10 (QT00106169), IL-17A (QT00103278), Foxp3 (QT00138369), and GAPDH (QT01658692) were purchased from Qiagen (Germantown, MD, USA).
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7

Gene Expression Analysis of Intestinal Tight Junctions

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Total RNA was extracted from a homogenized segment of small intestine (proximal jejunum) or colon, using the RNeasy Mini Kit (Qiagen) according to the manufacturer's instructions. RNase‐free DNase (Qiagen) was used to remove any contaminating DNA. RNA was reverse transcribed into cDNA and purified with QiaQuick (Qiagen). Gene expression was quantified on an Applied Biosystems StepOnePlus Real‐Time PCR System. Claudin‐1, Claudin‐2, Claudin‐3, Claudin‐4, Claudin‐5, Claudin‐15, Occludin‐1, JAM‐1, ZO‐1, Mucin‐2, IL‐17A, CD68, CXCL1, TNFα, and 18S Quantitect Primer Assays were purchased from Qiagen. Gene expression was normalized to the housekeeping gene 18S and expressed relative to the average wild‐type (AA) value using the comparative cycle threshold (Ct) method with the formula: Fold change = 2‐ΔΔCt.
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8

Quantitative RT-PCR of Inflammatory Genes

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Total RNA was extracted from RSCs by using an RNeasy Mini Kit (Qiagen, Hilden, Germany), and equal amounts of RNA were synthesized to cDNA with Superscript II RNase H Reverse Transcriptase (Invitrogen) according to the manufacturer's instructions. Quantitative RT-PCR (qRT-PCR) was performed using RT² SYBR Green ROX qPCR Mastermix (Qiagen). cDNA was amplified with primers β-actin, Il-6, Il-17rc, or Il-17a (Qiagen) separately for 50 cycles. All data were normalized to the β-actin mRNA level. Expression fold-changes were calculated by 2−ΔΔCT.
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9

Quantitative RT-PCR Analysis of Lung Cytokines

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RNA from sections of lung tissue was isolated by homogenization in TRIzol (Invitrogen) followed by phenol-chloroform extraction and isopropanol precipitation. cDNA was generated per standard protocol with Superscript reverse transcriptase (Invitrogen) and used as input for real-time PCR. Real-time PCR data were analyzed using the ΔΔCT method using SYBR Green chemistry (Applied Biosystems), with βNA fro serving as the endogenous housekeeping gene. All reactions were run on an ABI 7500 Fast Real-Time PCR System (Applied Biosystems). Samples were normalized to naïve controls. The following QuantiTech primer assays from Qiagen were used: Areg (QT00112217), IL-4 (QT00160678), IL-5 (QT00099715), IL-10 (QT00106169), IL-13 (QT00099554), IL-17a (QT00103278), IL-25 (QT00134645), IL-33 (QT00135170), Mcpt8 (QT00131565), Muc5ac (QT01161104), Nmb (QT00105945), Nmbr1 (QT00312494), Nmu (QT00133091), Nmur1 (QT00174006), and Tslp (QT00198261).
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