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4 protocols using lsr fortessa 5 l flow cytometer

1

Phenotypic Characterization of Activated T Cells

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Lymphocytes 5 × 106/mL were stimulated with 1 μg/mL PepMix in a CTL medium for 2 h and then for an additional 12 h in the presence of 1:1000 diluted Golgi plug (BD Biosciences, Franklin Lakes, NJ, USA). After incubation, cells were harvested with PBS and stained with the LIVE/DEAD Blue Dead Cell Staining Kit (Thermofisher) and antibodies to CD45RA-BB515, CD27-BV650, CD45RO-BV786, PD1-PECF594, CCR7-BV605 (BD Horizon, BD Biosciences), CD56-BV510, TIGIT (VSTM3)-PE/Cy7 (Biolegend, San Diego, CA, USA), CD8-AlexaFluor700 (Exbio, Prague, Czech Republic) and CD57—APC (BD Pharmingen). The cells were then washed with PBS, fixed using IC fixation and permeabilisation Buffer (eBioscience, San Diego, CA, USA) for 20 min and stained intracellularly with antibodies against IFN-gamma-PE, CD3-APCCy7 (Biolegend, San Diego, CA, USA) and CD4-PacificBlue (Exbio) in a permeabilisation buffer. The cells were washed and resuspended in a FACS buffer (FB-PBS containing 0.09% sodium azide, 1% BSA). The cells were measured using the BD LSR Fortessa 5 L flow cytometer (BD Biosciences). The obtained data were analysed by the FlowJo 10.5 software (TreeStar, Ashland, OR, USA). The gating strategy is shown in Figure 1.
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2

Multiparametric Flow Cytometry Profiling

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EECs were blocked with 10% normal goat serum for 10 min on ice. Cells were then either left unstained (negative control) or incubated with mouse anti-human E-cadherin-BV421 (BD Biosciences, Oxford, UK), mouse anti-human epithelial cell adhesion molecule (EpCAM)-PE (Abcam, Cambridge, UK), mouse anti-human CD31-PerCP-Cy5.5, and rat anti-human CD45-APC-Cy7 (BioLegend, London, UK). Flow cytometry was carried out on a BD LSR Fortessa 5 L flow cytometer (BD Biosciences, Oxford, UK). Analysis was carried using FlowJo software (BD Biosciences, Oxford, UK).
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3

Flow Cytometry Analysis of Activated Lymphocytes

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Lymphocytes 5 × 106 in 1 mL culture medium were stimulated with 1 µg/mL PepMix a for 2 h and then for an additional 12 h in the presence of 1:1000 diluted Golgi plug (BD Biosciences, Franklin Lakes, NJ, USA). After incubation, cells were harvested, washed with PBS and stained with the LIVE/DEAD Blue Dead Cell Staining Kit (Thermo Fisher) and with antibodies to CD56-BV510 (Biolegend, San Diego, CA, USA), CD8-AlexaFluor700 (Exbio, Prague, Czech Republic). CD45RO-BV786, and CCR7-BV605 (BD Horizon, BD Biosciences). The cells were then washed with PBS, fixed using IC Fixation and Permeabilization Buffer (eBioscience, San Diego, CA, USA) for 20 min and stained intracellularly with antibodies against IFN-gamma-PE, CD3-APC-Cy7 (Biolegend, San Diego, CA, USA), and CD4-PacificBlue (Exbio) in a the permeabilization buffer. The cells were washed and resuspended in a FACS buffer (FB-PBS containing 0.09% sodium azide, 1% BSA) and measured using the BD LSR Fortessa 5 L flow cytometer (BD Biosciences). The obtained data were analysed by the FlowJo 10.5 software (TreeStar, Ashland, OR, USA). The gating strategy is shown in suplementary Fig. S 2.
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4

Multimodal Characterization of Cell Phenotypes

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All reagents were purchased from Thermo-Fisher Scientific except where otherwise noted. All DMSO utilized was cell culture grade (Sigma). Confocal microscopy images were obtained on an Eclipse Ti-E microscope (Nikon, Tokyo, Japan) using a 63X or 20X objective at room temperature. Images were acquired and processed using NIS-Elements and ImageJ. Flow cytometry analysis was performed on a BD LSRFortessa 5 L flow cytometer equipped with FACSDiva (BD Sciences, USA) at the Flow Cytometry Core Facility at the University of Massachusetts Amherst. RT-PCR data was generated using a CFX Connect Real-Time PCR Detection System (Biorad, Hercules, CA). For assays requiring absorbance measurements, a SpectraMax M2 plate reader was used (Molecular Devices, San Jose, CA). Student’s t-test was used to analyze statistical significance between control groups.
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