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7 protocols using nr solution

1

Cell Culture Reagents Protocol

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NH4CH3CO2 and CH3CN were acquired from Carlo Erba Reagents (Val de Reuil, FR). HCOOH, Dulbecco’s modified Eagle’s medium (DMEM) with 4.5 g/L glucose, Triton X-100, and the NR solution were purchased from Sigma-Aldrich (St. Louis, MO, USA). Antibiotic solution (10,000 U/mL penicillin, 10,000 μg/mL streptomycin), 0.25% trypsin/1 mM EDTA, Fetal bovine serum (FBS), and HBSS (+/+) were purchased from Gibco Laboratories (Lenexa, KS, USA).
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2

Evaluating Fibroblast Viability on BC Carriers

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One mL of culturing medium containing fibroblast cell lines of density equal 1 × 105 were seeded on the BC carriers fortified with the appropriate concentrations of PUB9 and PUB10 (0.25 mg/L) and cultured for 72 h at 37 °C/5% CO2 in an incubator. Next, the procedures utilizing Neutral Red method were performed to assess the survivability of the cells. The medium for fibroblast growth was removed and 100 μL of the NR solution (40 μg/mL; Sigma-Aldrich, Dormstadt, Germany) was introduced to wells of the plate. Cells were incubated with NR for 2 h at 37 °C. After incubation, the dye was removed, wells were rinsed with phosphate buffer saline (PBS, Sigma Aldrich, Dormstadt, Germany) and left to dry at room temperature. Next, 500 μL of a de-stain solution (50% ethanol 96%, 49% deionized water, 1% glacial acetic acid; POCH, Lublin, Poland) was introduced to each well. The plate was shaken vigorously in a microtiter plate shaker (MTS4, IKA-Labortechnik, Berlin, Germany) for 30 min until NR was extracted from the cells and formed a homogenous solution. Finally, the value of NR absorbance was measured spectrometrically using a microplate reader (Multi-scan GO, Thermo Fisher Scientific, Waltham, MA, USA) at 540 nm. The absorbance value of dyed fibroblasts seeded on the BC carriers non-fortified with PUB9 and PUB10 was considered 100% of the potential cellular growth (positive control).
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3

Cytotoxicity Evaluation of Extracts

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The cytotoxicity of the extracts was tested for the BALB/c3T3 cell line by the neutral red (NR) uptake assay. Cells were seeded in 96-well plates at a density of 5 × 103 cells per well. After 24 h of incubation, extracts in a concentration range of 0.078 to 10 mg/mL were added. Dilutions were made in a cell cultivation medium. Cultivation in the presence of extracts was performed for 48 h. Afterwards, the plates were washed with phosphate-buffered saline (PBS) (Sigma, D8537, Irvine, UK), and 25 µg/mL NR solution (Sigma, N2889, Irvine, UK) diluted in 5% fetal calf serum containing media was added. After 3 h incubation in a humidified 5% CO2 atmosphere at 37 °C, the plate was washed with PBS, and the NR taken up by viable cells was extracted using desorbing fixative (50% ethanol/1% acetic acid/49% water). Absorbance at 540 nm was measured using a Tecan M200 Infinite Pro microplate reader (Tecan, Switzerland). Cytotoxicity was expressed as a concentration-dependent reduction in the uptake of NR, compared to the untreated controls, and the IC50 value for each compound was calculated using GraphPad 9 software. The cell line and test method complied with OECD guidelines [57 ].
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4

Neutral Red Uptake Cytotoxicity Assay

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The cytotoxicity of the extracts was tested for the BALB/c3T3 cell line by the neutral red (NR) uptake assay. Cells were seeded in 96-well plates at a density of 5 × 103 cells per well. After 24 h of incubation, extracts in a concentration range of 0.125 to 4 mg/mL were added. Dilutions were made in a cell cultivation medium. Cultivation in the presence of extracts was performed for 48 h. Afterward, the plates were washed with phosphate-buffered saline (PBS) (Sigma, D8537, Irvine, UK), and a 25 µg/mL NR solution (Sigma, N2889, Irvine, UK) diluted in 5%-fetal-calf-serum-containing-media was added. After 3 h incubation in a humidified 5% CO2 atmosphere at 37 °C, the plate was washed with PBS, and the NR taken up by viable cells was extracted using desorbing fixative (50% ethanol/1% acetic acid/49% water). Absorbance at 540 nm was measured using a microplate reader Tecan Infinite® 200 PRO (Tecan Group Ltd., Mannedorf, Switzerland). Cytotoxicity was expressed as a concentration-dependent reduction in the uptake of NR, compared to the untreated controls.
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5

Neutral Red Uptake Quantification in Cells

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To determine neutral red (NR) uptake by cells, the extruded coelomocytes were incubated for 10 min in the presence of the NR solution (Sigma-Aldrich; in PBS) at a final concentration of 40 µg/ml as described previously (Weeks and Svendsen 1996 (link)). Then, the cells were analysed by means of a FACScalibur flow cytometer (Plytycz et al. 2007 (link)). By producing density plots of FL2-H (neutral red-derived fluorescence) versus side scatter SSC (indicating cell complexity/granularity) allowed the proportion of neutral red accumulating cells to the NE- cells to be quantified. The resulting data were analyzed with the WinMDI 2.9 software (Joe Trotter, http://facs.scripps.edu).
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6

Colorimetric Viability Assays for Cell Cultures

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Both MTT and neutral-red (NR) assays were performed as reported elsewhere [11 (link),50 (link)]. Briefly, the culture medium was removed from the plate and replaced with a fresh medium containing 0.5 mg/mL of MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) or 0.33 mg/mL of the NR solution (both Sigma-Aldrich, St. Louis, MO, USA). Cells were incubated with the reagents for 2 h at 37 °C and washed with PBS in order to completely remove them. Then, for the MTT assay, a solution of 1 N hydrogen chloride-isopropanol (1:24, v:v) was pipetted to each well and mixed to dissolve the dark-blue formazan crystals formed. After a few minutes of gentle agitation on a rocking platform at room temperature, the absorbance of each sample was read at 570 nm in a Perkin Elmer Enspire microplate reader. For the NR assay, a solution of acetic acid-water-ethanol (1:49:49, v:v:v) was pipetted to each well to solubilize the dye and, after a few minutes of gentle agitation, the absorbance of each sample was read at 540 nm in the plate reader.
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7

Evaluating Cell Cytotoxicity via NR and Live/Dead Assays

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Cell cytotoxicity was evaluated using the neutral red (NR) assay and live/dead assay. hMSCs were seeded in 24-well plates (2 × 104 cells/well) and incubated for 24 h. At 24 and 72 h after treated with ZIOs, the cells were washed with phosphate buffered saline (PBS; Gibco BRL), and were incubated with NR solution (0.005% (w/v), Sigma Aldrich) for an additional 2–3 h at 37 °C. The cells were washed with PBS and the addition of elution medium (50% EtOH and 1% acetic acid) was followed by gentle shaking for 10 min. The optical density (OD) of each well was recorded at 540 nm using a microplate reader (Infinite F50, Tecan, Mannedorf, Switzerland). Live/dead assay was performed using fluorescein diacetate (FDA; Sigma) and ethidium bromide (EB; Sigma). FDA (green) stains the cytoplasm of viable cells, whereas EB (red) stains the nuclei of nonviable cells. The staining solution was freshly prepared by mixing 10 mL of FDA stock solution (1.5 mg/mL of FDA in dimethyl sulfoxide), 5 mL of EB stock solution (1 mg/mL of EB in PBS), and 3 mL of PBS. Cells were then incubated with the staining solution for 3–5 min at 37 °C. After staining, the samples were washed twice or thrice with PBS and examined using a fluorescence microscope (DFC 3000 G, Leica, Wetzlar, Germany).
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