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7900ht fast real time pcr system cycler

Manufactured by Thermo Fisher Scientific

The 7900HT Fast Real-Time PCR System Cycler is a laboratory instrument designed for real-time PCR analysis. It provides accurate and reliable data collection and analysis for a variety of applications.

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2 protocols using 7900ht fast real time pcr system cycler

1

Gene Expression Analysis of Glucose Transporters

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Gene expression analyses were carried out on Caco-2 cells to determine the direct action of treatments on gene expression of SGLT1 and GLUT2 glucose transporters. Caco-2 cells seeded at 2 × 105 cells/well in a 6-well plate were incubated for 48 h treated with either 100 μM pure peptides (AKSPLF, ATNPLF, FEELN, LSVSVL), or 10 mg/mL PFRA or 100 μM PHL. After pre-treatments for two h on glucose free media, cells were stimulated with 20 mM glucose during 30 and 24 h. Then, RNA was collected using a RNAeasy kit (Qiagen, Germantown, MD), quantified, and checked for quality. cDNA was synthesized using a high capacity cDNA reverse transcription kit (Applied Biosystems, Foster City CA). Quantitative q-PCR was performed using TaqMan® gene expression assay in a 7900HT Fast Real-Time PCR System Cycler (Applied Biosystems, Foster City, CA) and targeted human genes SGLT1 (SLC5A1), GLUT2 (SLC2A2), GAPDH (Gapdh2). Thermocycling conditions were: one cycle at 95 °C for 10 min and then 40 cycles at 95 °C for 15 s followed by 60 °C for one min before a dissociation stage. The relative mRNA expression levels of each gene were calculated using the 2−ΔΔCt method in reference to GAPDH.
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2

Quantitative PCR Protocol for FFPE-Derived RNA

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Twelve genes included in the reduced ECM3 and IFN classifiers, and three housekeeping genes (ACTB, RPLP1, GAPDH) were quantified by qPCR using TaqMan assays that yielded short amplicons (< 84 bp) and with experimentally proven optimal performance on FFPE‐derived RNA (tested on five samples). All primers were obtained from Applied Biosystems (Foster City, CA, USA).
The complete list of TaqMan probes is reported in Fig. S1 (panel A).
qPCR assays were conducted in triplicate in a total volume of 15 µL, which included 7.5 µL of TaqMan Fast Universal PCR master mix (Applied Biosystems), 0.75 µL of TaqMan® Gene Expression Assay (Applied Biosystems), and 10 ng of template. The following cycling conditions were used: 20 s 95 °C, followed by 40 cycles of 1 s 95 °C and 20 s 60 °C, in a 7900HT Fast Real‐Time PCR System cycler (Applied Biosystems). Each plate contained 29 samples in triplicate along with blanks and a calibrator for controlling interplate variability. qPCR curves and Cq (quantification cycle) values were generated using the sds2.4 software (Thermo Fisher Scientific, Waltham, MA, USA). The experimental scheme is shown in Fig. S1B.
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