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23 protocols using d5100 camera

1

Corneal Epithelial Wound Healing

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The experimental animals were anesthetized, and the cornea was assessed for a blink reflex with cold saline. Fluorescein visualization (DIOFLUOR Strips; Innova Medical Ophthalmics, Toronto, ON, Canada) and digital imaging (D5100 camera; Nikon, Tokyo, Japan) were performed immediately after de-epithelialization and every 24 hours up to 96 hours after injury to monitor wound size and healing of the corneal epithelium as described previously.65 (link)
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2

Photographic Documentation of Extermination Camp

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Within the framework of the research investigation, extensive photographic documentation was performed with a NIKON D5100 camera (Tokyo, Japan), and this made the basis for the macroscopic description of the structures that are present within the area of the former extermination camp. Out of several hundred photographs, several were chosen which best reflected the observed forms of damage of the bricks.
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3

Morphological Characterization of Beauveria spp.

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A thorough morphological investigation was conducted following the techniques described in Khonsanit et al. (2020) . The samples and culture plates were photographed using a digital Nikon D5100 camera. Colony characteristics and microscopic measurements of phialides and conidia (length and width) were done after growth on potato dextrose agar medium (PDA, 20 g Difco potato dextrose agar, 1 L distilled water) and incubation under white light/dark cycles at room temperature; 30 phialides and conidia were measured for each strain. To statistically test the difference between the genetic groups within each of B.asiatica and B. bassiana, five strains for each genetic group were examined for the width and the length of conidia and phialides (Table S3). The data were analysed with one-factor ANOVA for testing difference between species, as well as between the genetic groups within each species.
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4

Morphological Characterization of Beauveria Species

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A thorough morphological investigation was conducted following the techniques described in Khonsanit et al. (2020) . The samples and culture plates were photographed using a digital Nikon D5100 camera. Colony characteristics and microscopic measurements of phialides and conidia (length and width) were done after growth on potato dextrose agar medium (PDA, 20 g Difco potato dextrose agar, 1 L distilled water) and incubation under white light/dark cycles at room temperature; 30 phialides and conidia were measured for each strain. To statistically test the difference between the genetic groups within each of B.asiatica and B. bassiana, five strains for each genetic group were examined for the width and the length of conidia and phialides (Table S3). The data were analysed with one-factor ANOVA for testing difference between species, as well as between the genetic groups within each species.
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5

Colony Microscopy Imaging Techniques

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Colonies were observed and photographed using Discovery V20 stereoscope (Zeiss) equipped with Infinity1 camera (Luminera) or using Nikon D5100 camera equipped with Nikon 50-mm lens.
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6

Coral Brightness Measurement Protocol

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Prior to the experiment, photographs of each fragment were taken using a Nikon D5100 camera. Images of the front and back of each fragment were taken using the same camera, settings, and lighting each day of the experiment. Brightness values in images were measured for the front and back sides of each fragment using image analysis software (ImageJ, Schneider, Rasband & Eliceiri, 2012 (link)). Corals become brighter (paler) as their symbioses with pigmented algae break down. Therefore, changes in coral brightness reflect changes in algal densities (Winters et al., 2009 (link)). A standard curve of brightness values was constructed using standard Coral Health Charts that were included in each image. Briefly, brightness (white value intensity measured in unitless values ranging 0–255) was measured for a series of standard color cards (arbitrary values 1–6) in each photograph to construct a linear curve of brightness to compare fragments. Brightness values were standardized to color cards to normalize for any minor differences in lighting across days.
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7

Characterizing Fungal Spore Morphology

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The characteristics of the sori and teliospores were examined on infected plants. Pictures of sori were taken using a Nikon D5100 camera. Teliospore characteristics were studied using a compound microscope (LM; BX60F; Olympus optical Co. Ltd., Japan) equipped with ProgRes C5 camera (JENOPTIK, Germany) and CapturePro software; and a scanning electron microscope (SEM; Hitachi SU6600) at 5.0 kV at the Clemson University Electron Microscopy Facility. For LM, teliospores were mounted in lactic acid (85–90 %, VWR, International, LLC) (Savchenko et al. 2014 (link)) and examined at 1 000 × magnification. The diameters of 30 teliospores, oriented in plane view so that they appeared globose, were measured from each sample collection. The colors of the sori and the teliospores were described according to Rayner (1970) . For SEM examination, teliospores were dusted on double-sided adhesive carbon tape, mounted on aluminum stubs, and sputter-coated with platinum using a Cressington sputter-coater (ca. 30 nm in 6 min).
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8

Evaluating Immune Responses to OVA and BCG Vaccines

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Antibody titers were measured by enzyme-linked immunosorbent assay (ELISA) by coating 100µg/ml OVA or 50µg/ml BCG vaccine. Cellular immune responses were evaluated by intracellular cytokine staining and flow cytometry. In brief, peripheral blood mononuclear cells (PBMCs) were isolated and stimulated overnight with OVA (100µg/ml) in the presence of 4µg/ml anti-CD28 antibody (37.51). Golgi-plug was added 5 hours before harvesting and cells were stained with PerCP/Cy5.5-anti-CD8 (53–6.7) and FITC-anti-IFNγ (XMG1.2) antibodies followed by flow cytometry analysis. Local reactions were monitored daily for at least 2 weeks. Pictures of local reactions were taken by a NIKON D5100 camera. In some studies, skins were dissected and subjected to standard histological analysis or real-time PCR analysis of pro-inflammatory cytokine expression as our previous report [15 (link)].
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9

Measuring Cellular Invasion Dynamics

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The invasion of transfected cells in monolayer, anoikis resistant and reseeding conditions were assayed in modified Boyden chambers as described previously, with certain modifications (16 (link)). Briefly, for the invasion assay, 8-μm pore membrane filters were placed in Transwell chambers (Corning, Inc.) and the upper chamber was coated with 30 μg Matrigel (BD Biosciences) at 37°C in an incubator overnight. A suspension of 2×105 cells from each culture condition was added to the upper chamber (200 μl/chamber), and DMEM was added to the lower chamber (500 μl/chamber). The chamber was incubated at 37°C for 24 h in a humidified atmosphere of 5% CO2. Subsequently, the cells on the upper surface were removed with a cotton swab, and the cells were fixed with 30% methanol, followed by staining with 0.5% crystal violet in 20% methanol, both steps were performed for 15 min at room temperature. Finally, stained cells were counted in 5 randomly selected fields, using an inverted microscope (Eclipse TS100; Nikon Corporation) and then imaged using an attached D5100 camera (Nikon Corporation) (magnification, x100).
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10

Colorimetric Analysis of Fish Skin

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The dorsal and abdominal skin color parameters of the fish were measured by a Konica Minolta CR-400 tristimulus colorimeter (Minolta, Osaka, Japan). The L* value represents lightness (0 for black, 100 for white), a* represents the red/green dimension, and b* represents the yellow/blue dimension, the value of chroma C is the distance from the lightness axis (L*) and starts at 0 in the center, in accordance with the recommendations of the International Commission on Illumination [21 ]. Chroma is an expression of the saturation or intensity of the color and is calculated by the equation C = (a*2 + b*2)1/2 [22 (link)]. Fish from different experimental groups were photographed using a Nikon D5100 camera (Japan).
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