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4 protocols using pnp laurate

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Protocols for Microbial Fatty Acid Synthesis

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pNP acetate (pNPC2), pNP butyrate (pNPC4), pNP caproate (pNPC6), pNP caprylate (pNPC8), pNP caprate (pNPC10), and pNP laurate (pNPC12) were purchased from Sigma–Aldrich (USA). Carbaryl (99%) and 1-naphthol (99.9%, standard) were obtained from Aladdin Biochemical Technology Co., Ltd. (Shanghai, China) and dissolved in acetonitrile at 1 mg/mL as the working solution. All molecular biological enzymes were purchased from Takara (Dalian, China) or Vazyme (Nanjing, China). HPLC-grade and all other analytical reagents were from Sinopharm (Shanghai, China). Ni-NTA agarose was obtained from Qiagen (Hilden, Germany). Lysogeny broth (LB) medium (pH 7.0, g/L) contained 10.0 g tryptone, 5.0 g yeast extract, and 10.0 g NaCl, and agar was added to a final concentration of 2.0% (w/v) to make solid medium if necessary.
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Cloning and Purification of Erythrobacter seohaensis Esterase

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Erythrobacter seohaensis SW-135 was kindly provided by Prof. Jung-Hoon Yoon and cultivated in marine broth 2216 (BD DifcoTM, United States) at 30°C (Yoon et al., 2005 (link)). Kits for genomic DNA isolation, DNA purification, and plasmid isolation were purchased from Omega (United States). DNA polymerase was purchased from TaKaRa (China) and T4 DNA ligase and restriction endonucleases were purchased from New England Biolabs (United States). Plasmid pSMT3 (Herrmann et al., 1996 (link)) was stored in our lab and used as the vector for gene cloning and sequencing as well as protein expression. Escherichia coli BL21 (DE3) was used for protein expression. E. coli strains were grown at 37°C in Lysogeny broth (LB) medium containing 10 g/L NaCl, 10 g/L tryptone, and 5 g/L yeast extract (BD DifcoTM, United States), pH 7.0, supplemented with kanamycin (50 μg/mL) when required. Ni Sepharose (GE Healthcare, United States) was used to purify the His6-tagged protein. p-Nitrophenyl (NP) acetate (C2), p-NP butyrate (C4), p-NP caprylate (C8), p-NP decanoate (C10), p-NP laurate (C12), p-NP myristate (C14), and p-NP palmitate (C16) were purchased from Sigma–Aldrich (United States) and p-NP hexanoate (C6) was purchased from TCI (Japan).
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Heterologous Expression of Lipolytic Enzymes

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Escherichia coli DH5α (Biomed, Beijing, China) was used for propagation of plasmids, and P. pastoris GS115 (his4) was used for protein expression. Trizol reagent (Invitrogen, Carlsbad, USA) and Oligotex mRNA Midi Kit (Qiagen, Dusseldorf, Germany) were used for total RNA extraction and mRNA purification. BD SMART™ RACE cDNA Amplification Kit was purchased from Clontech (Palo Alto, CA, USA). Ex Taq DNA polymerase, PrimeSTAR HS DNA polymerase, restriction endonucleases, and pMD18-T were purchased from TaKaRa (Tokyo, Japan). T4 DNA ligase was purchased from New England Biolabs (Ipswich, MA, USA). The Pichia pastoris expression kit was obtained from Invitrogen (Carlsbad, USA). p-Nitrophenol (pNP), pNP acetate (pNPA), pNP butyrate (pNPB), pNP hexanoate (pNPH), pNP caprylate (pNPC), pNP decanoate (pNPD), pNP laurate (pNPL), pNP myristate (pNPM), and pNP palmitate (pNPP) were purchased from Sigma Chemical Co. (St. Lous, MO, USA). pNP hexanoate (pNPH) was obtained from HEOWNS Company (Tianjin, China). Olive oil, soybean oil, and peanut oil were purchased from a local market. All other chemicals used were of analytical grade unless otherwise stated.
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Characterization of Esterase Enzymes

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E. coli DH5α (TaKaRa, Japan) and BL21 (DE3) (Novagen, USA) were used as cloning and expression hosts, respectively. The vector pGEX-6P-1 (GE Healthcare, USA) was used for gene cloning and protein expression. Serratia sp. and E. coli were grown in LB medium (tryptone 1 %, yeast extract 0.5 % and NaCl 1 % w/v) at 28 and 37 °C, respectively. p-nitrophenyl esters: p-NP acetate (C2), p-NP butyrate (C4), p-NP hexanoate (C6), p-NP caprylate (C8), p-NP laurate (C12) and p-NP palmitate (C16) were all purchased from Sigma (St. Louis, MO, USA).
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