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4 protocols using quant ittm picogreendsdna reagent

1

Murine Dendritic Cell Activation Assay

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DMEM (C11995500BT), Fetal bovine serum qualified Australia (10099141C) and Trypsin-EDTA (0.25%), phenol red (25200072) were purchased from Gibco; CD11c-FITC (117306), CD86-PerCP (105026), CD80-APC (104714) and CD40-PE (124610) were purchased from Biolegend; Goat Anti-Mouse IgG Antibody (HRP) (ab98762), Goat Anti-Mouse IgA alpha chain (HRP) (ab97235), Goat Anti-Mouse IgG1 heavychain (HRP) (ab97240), Goat Anti-Mouse IgG2a heavy chain (HRP) (ab97245), TMB ELISA Substrate (ab171523) and 450nm stop solution for TMB substrate (ab171529) were purchased from Abcam; Penicillin-Streptomycin Solution100X (C0222), and BSA, FranctionV (ST023) were purchased from Beyotime; Mouse IFN-gamma ELISpot PLUS kit (HRP) (3321-4HPW-2), Mouse TNFa ELISA kit (1217202), Mouse IL-1β ELISA kit (1210122), and Mouse IL-12p70 ELISA kit (1211202) were purchased from Dakewe; GM-CSF (315-02-10ug) and IL-4 (214-14-20ug) were purchased from PEPROTECH; Quant-iTTM PicoGreendsDNA Reagent (P7581) was purchased from Thermo Scientific; 2019-nCoV Protein RBD (DRA36) was purchased from novoprotein; Albumin from chicken egg white (A5503) was purchased from sigma.
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2

Quantifying DNA Content in PSC-NPCs

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After washing with PBS to remove any unbound cells, scaffold cultures were placed directly into 1 mL lysis buffer [10 mM Tris pH 8, 1 mM EDTA and 0.2% v/v Triton X-100] within 1.7 mL microtubes. Samples were vortexed for 10 s every 5 min, for a total period of 30 min, and kept on ice between mixes. At this point, samples were either placed in -80 °C for storage or processed further. Samples were then homogenised 10-15 times using a 21gauge needle to produce cell lysate. Lysate was then diluted 1:10 in 1 × TE buffer (Thermo Fisher Scientific). Quant-iT TM PicoGreen® dsDNA reagent (Thermo Fisher Scientific) was diluted 1:200 in 1 × TE buffer. A 1:1 mixture of lysate solution and 1 × PicoGreen® reagent was placed in an OptiPlate-96, black opaque 96-well microplate (PerkinElmer). Fluorescence was measured at excitation and emission wavelengths of 460 nm and 540 nm, respectively, using an EnSpire TM 2300 Multilabel Plate Reader (Perkin Elmer) running EnSpire 3.0 software (Perkin Elmer).
Results were compared to a standard curve for 1-10 × 10 6 hPSC -NPCs analysed as above for dsDNA amount. Human PSC-NPCs cultured on laminin-coated 2D TCPS were harvested via 10 min incubation in a solution of 500 μL Accutase. Human PSC-NPCs were quantified using the trypan blue exclusion method with a 0.4% w/v solution of trypan blue and counted using a hemocytometer.
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3

DNA Quantification from PBMCs

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PBMCs in RIPA buffer were used to extract total DNA using a commercial DNA purification kit according to the manufacturer’s protocol (QIAGEN Genomic Tip 20/G). DNA samples were quantified in a 96-well plate reader (Synergy NEO HTS; BioTek Instruments) via a standardized protocol using a fluorescence dye (Quant-iTTM PicoGreen® dsDNA reagent; Molecular Probes) [30 (link)]. In brief, lambda (λ)/HindIII DNA (Invitrogen) was diluted in 1xTE buffer to a series of concentrations (0, 2.5, 5, 10, 20 ng/µL) to generate a standard curve for DNA quantification. Concentrated DNA samples were quantified and diluted to a final concentration of 3 ng/μL via serial dilution (10 ng/µL, 5 ng/µL, 3 ng/µL) and stored at -80°C for the QPCR assay.
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4

Maternal Stool DNA Isolation Protocol

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Maternal stool samples were shipped overnight in a Credo Cube to the University of North Carolina at Chapel Hill Microbiome Core Facility. Genomic DNA was isolated on a King Fisher Flex automated instrument (Thermo Fisher Scientific, Grand Island, NY) using the MagMAX™ DNA protocol, following manufacturer's instructions (see Appendix). The quality of the isolated DNA was assessed by agarose gel electrophoresis and purity verified using 260/280 and 260/230 ratios measured by NanoDrop 1000 instrument (Thermo Fisher Scientific, Waltham, MA). DNA concentration was quantified using Quant-iTTM PicoGreen dsDNA Reagent (Molecular Probes, Thermo Fisher Scientific division, Eugene, OR). DNA was stored in elution buffer at −20°C prior until further processing.
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