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2 protocols using methyl oeg4 nhsester

1

Functionalized DNA Hybridization Assay

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Poly-l-lysine hydrobromide (MW =
15–30 kDa by viscosity), poly(sodium 4-styrenesulfonate) (average
MW = 70 kDa), D2O, and tablets for 10 mM PBS solution (pH
7.4, ionic strength of 150 mM) were obtained from Sigma-Aldrich. HCl
solution was obtained from SelectiPur. Methyl-OEG4-NHS
ester was purchased from ThermoFisher Scientific, while DBCO-OEG4-NHS was obtained from Click Chemistry Tools. The membranes
for dialysis (Spectra/Por, 6–8 kDa cutoff, diameter of 6.4
mm) were purchased from Spectrum Labs, Greece. The azide-DNA (MW,
7421 g/mol; 5′-N3-PEG4-ACCACAAGTTTATATTCAGTCAT-3′,
23 nt) was acquired from Biomers.net GmbH (chemical structure of the linker in Figure S1). cDNA (complementary to the KRAS sequence, 5′-ATGACTGAATATAAACTTGTGGTAGTTGGAGCTGGTGGCGTAG-3′,
43 nt) and ncDNA (5′-CTACGCCACCTCAACCTACGCCACCTCCACCTACGCCACCTC-3′,
42 nt) were purchased from Eurofins Genomics and used as received.
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2

Biofunctionalized Surfaces for Biosensing

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Poly-l-lysine hydrobromide (MW =
15–30 kDa by viscosity), EDC, NHS, tablets for 10 mM PBS solution
(pH 7.4), 3-trichlorosilylpropyl methacrylate, 2-hydroxyethyl methacrylate
(HEMA), ethylene glycoldimethacrylate (EGDMA), tridecafluoro-(1,1,2,2)-tetrahydrooctyl-trichlorosilane,
bovine serum albumin, ammonium persulfate (APS), and NaCl salt were
purchased from Sigma-Aldrich. Methyl-OEG4-NHS ester, biotin-OEG4-NHS ester, Mal-OEG4-NHS ester, the Zeba spin desalting
columns (7 kDa MWCO, 5 mL), the immobilized TCEP disulfide reducing
gel (tris[2-carboxyethyl] phospine hydrochloride immobilized onto
4%cross-linked beaded agarose), and the streptavidin-Fluorescein conjugate
were obtained from ThermoFisher Scientific. Oligonucleotides were
purchased from Eurofins Genomics and used as received. SiO2 QCM chips (with fundamental frequency of 5 MHz) were purchased from
Biolin Scientific. Poly(dimethylsiloxane) Sylgard 184 and curing agent
were used as received from Dow Corning. Ormostamp material and MA-T1050
were purchased from Microresist. The PNA probes were synthesized using
the materials and the procedure previously described for PNA2,52 (link) as briefly reported in the Supporting Information together with the characterization
of the newly synthesized PNA3 and PNA4.
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