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16 protocols using alexa fluor 647 goat anti mouse antibody

1

Endogenous IgG Immunostaining of 4T1 Tumors

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Endogenous IgG immunostaining of orthotopic 4T1 tumors and livers was performed following the same Immunofluorescence (IF) protocol as described above to assess leakiness. Endogenous IgG was detected using Alexa Fluor 647 goat anti-mouse antibody (dilution 1/200, Invitrogen by Thermo Fisher Scientific, catalog no. A21235) and slides were counterstained with DAPI (1 μg/mL in PBS). The coverslips were mounted, and sections were imaged using Zeiss confocal microscope and 20× objective (N = 3 tumors).
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2

Immunodetection of Phosphorylated Tyrosine

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Anti-Tyr(P) specific mouse monoclonal antibody P-Tyr-100 was purchased from Cell Signaling Technology (Danvers, MA) and Alexa fluor 647 goat anti-mouse antibody was purchased from Invitrogen Life Technologies., Inc., (Grand Island, NY). The small molecule substrate pNPP was purchased from EMD Millipore (Billerica, MA) and remaining chemicals were purchased from Sigma-Aldrich (St. Louis, MO).
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3

Assessing Tumor Vascular Leakage

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Endogenous IgG immunostaining of orthotopic 4T1 tumours and livers was performed following the same IF protocol as described above to assess leakiness. Endogenous IgG was detected using Alexa Fluor 647 goat anti-mouse antibody (dilution 1/200, Invitrogen by Thermo Fisher Scientific, cat. A21235) and slides were counterstained with DAPI (1 g/mL in PBS). The coverslips were mounted, and sections were imaged using Zeiss confocal microscope and 20x objective (N=3 tumours).
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4

Endogenous IgG Immunostaining of 4T1 Tumors

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Endogenous IgG immunostaining of orthotopic 4T1 tumours and livers was performed following the same IF protocol as described above to assess leakiness. Endogenous IgG was detected using Alexa Fluor® 647 goat anti-mouse antibody (dilution 1/200, Invitrogen by Thermo Fisher Scientific, cat. A21235) and slides were counterstained with DAPI (1 µg/mL in PBS). The coverslips were mounted, and sections were imaged using Zeiss confocal microscope and 20x objective (N=3 tumours).
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5

Immunofluorescent Detection of CaSR Expression

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Cells were stained to detect CaSR expression using a monoclonal antibody against the ADD region in the N-terminal domain of the CaSR sequence. Cells grown on glass cover slips were fixed in 3.7% paraformaldehyde for 20 min, permeabilized with 0.2% Triton-X for 20 min, and blocked with 5% goat serum for 30 min. Cells were incubated with anti-CaSR antibody (1:200, Abcam, UK) for 1 h at room temperature. After extensive washing, samples were incubated with Alexa Fluor 647 goat-anti-mouse antibody (1:1000, Life Technologies). Nuclei were stained with DAPI (1:3000, Roche, Switzerland). Whole slide images were acquired using TissueFAXS (TissueGnostics, Austria). Isotype-specific IgG was used as negative control and human kidney tissue was stained as positive control.
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6

Quantifying Subcellular Bcl-xL Localization

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Cells (MCF7/TGL/pQ, MCF7/TGL/HA‐Bcl‐xL, MCF7/TGL/HA‐Bcl‐xLR132W, MCF7/TGL/HA‐Bcl‐xLN136K (Clone 5), MCF7/TGL/HA‐Bcl‐xLR165W, and MCF7/TGL/HA‐Bcl‐xLA201T) were cultured on glass coverslips for 24 h before fixation in 4% paraformaldehyde in PBS for 10 min. After permeabilizing and blocking in 0.5% BSA in PBS with 0.025% Triton X‐100, 0.02% NaN3, and 0.3 mM DAPI for 2 h, coverslips were incubated with primary antibody (mouse anti‐HA 1:200; Cell Signaling Technology, 2367) overnight at 4°C. The coverslips were then washed four times with PBS for 5 min each, followed by incubation with Alexa Fluor 647 goat antimouse antibody (1:400; Life Technologies, A21236) at room temperature in the dark for 2 h, and were washed four times with PBS for 5 min each. Coverslips were mounted with VectaShield mounting medium (Vector Labs) and cells were examined using confocal microscopy (Olympus FLUOVIEW FV10i). The total, nuclear, and cytoplasmic immunofluorescence signals of more than 40 cells per cell line from a minimum of 10 separate images were quantified using Fiji ImageJ (version 1.51p).
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7

Cell-Based ELISA for Anti-Spike Antibodies

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A cell-based ELISA as described previously26 was used to determine the anti-spike glycoprotein antibody response in the mouse sera and convalescent plasma. Briefly, MDCK-Spike was produced by stably transfecting parental MDCK-SIAT1 cells with full-length SARS-CoV-2 spike glycoprotein cDNA using a lentiviral vector. MDCK-Spike cells (3 × 104 cells/well) were seeded in 96-well plates and incubated overnight at 37 °C. Mouse sera was diluted as above and 50 μL was transferred to the washed plates seeded with MDCK-Spike cells for 1 h at RT. Human plasma was pre-incubated with MDCK-SIAT1 cells as described above, before dilution and adding to MDCK-Spike for 1 h at RT. Parallel plates were seeded with MDCK-SIAT1 for background subtraction as described above for human plasma. For mouse sera, 50 μL of a secondary Alexa Fluor 647 goat-anti-mouse antibody (1:500) (Life Technologies A21235) was then added for 1 h at RT. For human sera, 50 μL of a secondary Alexa Fluor 647 goat-anti human antibody (1:500) (Life Technologies A21455) was used. Plates were then washed with PBS and 100 μL of PBS/1% formalin was added to each well. Fluorescence signal was read on a Clariostar plate reader and the EPT titre was calculated as described above.
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8

Neutrophil NETosis Imaging Protocol

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Neutrophils (1 × 106) were seeded on a sterile round glass cover slip that was placed in a 24-well cell culture plate. As described above in the flow cytometric assay for NETs, 100 μM PMA or 1 μg/ml VP1 was added. After 4 h of incubation, the glass cover slips with the attached cells were carefully removed from a 24-well culture plate and fixed with ice-cold acetone. Then, samples were blocked with 5% goat sera and stained overnight with a rabbit polyclonal antibody to histone 3 (citrulline R2 + R8 + R17) (1:300, ab5103, Abcam) and with a mouse anti-MPO antibody (1:300, ab90810, Abcam). The samples were washed in PBST and further stained with an Alexa Fluor® 555 goat anti-rabbit antibody (1:500, Life Technologies, USA) and an Alexa Fluor® 647 goat anti-mouse antibody (1:1000, Life Technologies, USA). Nuclei in the samples were stained with 4′6-diamidino-2-phenylindole. Images were captured by Zeiss LSM7 confocal fluorescence microscopes using the appropriate lenses and filters.
For experiments in vivo, the left lower lung of mice that were or were not treated with VP1 was carefully harvested, frozen in Tissue-Tek OCT media and prepared into 7-μm-thick slices. The fixation, blocking, antibody incubation, and image acquisition of these sections were performed as described at the cell level.
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9

Tissue Fixation and Histological Analysis

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Tissues were fixed in 10% NBF for 24 h before being dehydrated, embedded in paraffin wax, and sectioned (4 μm) using standard procedures as previously described (Zhu et al., 2016) . Sections were dewaxed in xylene and stained with Von Kossa and alizarin red (Sigma) to visualize phosphate and calcium deposition, respectively.
For immunofluorescence analysis, sections were demasked with 10 mM sodium citrate buffer. Endogenous peroxidase and nonspecific antibody binding were blocked before overnight incubation with primary antibodies LC3 (1:300; PM036; MBL International), Runx2 (1:200; Sc-390351; Santa Cruz Biotechnology), or ATG3
(1:300; ab108251; Abcam) at 4°C. The sections were then incubated for 1 h in the dark with Alexa Fluor@488 anti-rabbit antibody (Life Technologies; A11034) and Alexa Fluor@647 goat anti mouse antibody (Life Technologies; A21236). Sections were washed in PBS and stained with Hoescht (1:10,000; Sigma) and then mounted onto slides with Prolong ® Gold Anti-Fade Reagent (Life Technologies).
Fluorescence signal was detected under a Zeiss LSM 710 inverted confocal microscope. Control sections were incubated with nonimmune goat IgG (2 μg IgG/ml) in place of the primary antibody.
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10

Immunofluorescence Staining and Confocal Microscopy

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Fluor@488 anti-rabbit antibody (A11034; Life Technologies) and Alexa Fluor@647 goat anti mouse antibody (A21236; Life Technologies). Cells were then washed with PBS and stained with Hoechst (1:10,000; Sigma). Glass coverslips were mounted onto slides with Prolong ® Gold Anti-Fade Reagent containing DAPI (Life Technologies). Fluorescence signal was detected under a Zeiss LSM 710 inverted confocal microscope. ImageJ was used to determine the number of LC3 puncta in the cytoplasm and Runx2 intensity in the nucleus.
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