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40 protocols using shelxtl software package

1

Growth and Structural Analysis of Pillar-3D1 Complex

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Suitable single crystals of the synthesized inclusion complex Pillar-3D1 were grown by the slow solvent evaporation method from chloroform and a dichloromethane/DMF mixture. The data were collected on a Bruker X8 prospector diffractometer (Bruker, Germany) using Cu-Kα radiation at −123 °C. The reflection frames were then integrated with the Bruker SAINT Software package using a narrow-frame algorithm. Finally, the structure was solved using the Bruker SHELXTL Software Package and refined using SHELXL-2017/1. All non-hydrogen atoms were refined anisotropically and hydrogen atoms were refined using the riding model. CCDC 2049467 and 2081939.
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2

Single Crystal X-ray Diffraction of Pillar-1

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Crystals suitable for single crystal X-ray diffraction of Pillar-1 were grown by diffusion using dichloroethane and hexane. The single crystal data were collected on a diffractometer (R-AXIS RAPID, Rigaku, Japan) using Rigaku's Crystal clear software package at −123 °C. The structure was solved and refined using the Bruker SHELXTL Software Package (structure solution program: SHELXS-97; refinement program: SHELXL-97). CCDC 1561385.
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3

Structural Analysis of Pterostilbene-Picolinic Acid Cocrystals

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Single-crystal
X-ray diffraction (SCXRD) intensity data of the two pterostilbene/picolinic
acid cocrystal polymorphs were collected using a D8 Venture system
equipped with a multilayer monochromator and a Mo microfocus (λ
= 0.71073 Å). Frames were integrated with the Bruker SAINT software
package using a SAINT algorithm. Data were corrected for absorption
effects using the multiscan method (SADABS).12 The structures were solved and refined using the Bruker SHELXTL
software package, a computer program for the automatic solution of
crystal structures, and refined by a full-matrix least-squares method
with ShelXle Version 4.8.0, a Qt graphical user interface for the
SHELXL computer program.13 (link)Table 1 contains the crystallographic
data for the two structures.
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4

Crystallographic Characterization of 2E-N-(2-Bromo-5-Fluorophenyl)-3-Phenylprop-2-Enamide

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Crystals of (2E)-N-(2-bromo-5-fluorophenyl)-3-phenylprop-2-enamide (15) suitable for a single X-ray analysis were prepared by the slow evaporation of ethanol from the solution of compound 15 at 4 °C. The diffraction data were collected on a D8 QUEST diffractometer (Bruker) equipped with a PHOTON 100 CMOS detector, using Mo–Kα radiation (λ = 0.71073 Å). The data collection and reduction were performed using the APEX3 software [47 ]. The structure was solved by a direct method (SHELXS) and refined using the Bruker SHELXTL software package [48 (link)]. The benzene ring, involving C4, C5, C6, C7, C8, and C9 atoms, was refined with a riding group fitting (AFIX 66) with the fixed C–C bonds (1.39 Å). All H-atoms were found from difference Fourier maps and refined using a riding model, with C–H = 0.95 Å for (CH) and 0.88 Å for (NH) and with Uiso(H) = 1.2 Ueq(CH, NH). The graphics were drawn, and additional structural calculations were performed by the DIAMOND [49 ] software.
Crystallographic data has been deposited with the Cambridge Crystallographic Data Centre under CCDC deposition number 1957819. Copies of this information may be obtained free of charge from the Director, CCDC, 12 Union Road, Cambridge CB2 1EY, UK (fax: +44-1223-336033; e-mail: [email protected] or www: http://www.ccdc.cam.ac.uk).
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5

Structural Characterization of Zn(II) Complex

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Crystallographic data for [ZnII(H3qp4)](OTf) (3) were collected using a Bruker D8 VENTURE κ-geometry diffractometer system equipped with a Incoatec IμS 3.0 microfocus sealed tube and a multilayer mirror monochromator (Mo Kα, λ = 0.71073 Å). Diffraction data were integrated with the Bruker SAINT software package using a narrow-frame algorithm. Data were corrected for absorption effects using the Multi-Scan method (SADABS). The structure was solved and refined using the Bruker SHELXTL Software Package. Selected crystallographic data are presented in the ESI and can be found in the Cambridge Structural Database (number 2173563).
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6

Single Crystal X-ray Structural Analysis

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The crystals of the complexes [Au(3I5Braza)(PPh3)] (7) and [Au(2Me4Claza)(PPh3)]·½H2O (8′) suitable for a single crystal X-ray analysis were prepared by slow evaporation of the solutions of the named complexes in the mixture of dichloromethane and n-hexane (1:1, v/v). X-ray data of both crystals were collected on a Bruker (Billerica, MA, USA) D8 QUEST diffractometer equipped with a PHOTON 100 CMOS detector (Bruker) using Mo–Kα radiation. The APEX3 software package was used for data collection and reduction [52 ]. The structures were solved using a direct method and refined using the Bruker SHELXTL Software Package [53 (link)]. The graphics were drawn and additional structural calculations were performed using DIAMOND [54 ] and Mercury [55 (link)] software.
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7

Single Crystal X-ray Diffraction Analysis

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The crystal was measured on the Bruker D8 Venture diffractometer (Bruker AXS, Inc., Madison, WI, USA) at 130.0(5) K [78 ,79 ,80 ]. The structure was solved and refined using SHELXTL Software Package (Bruker AXS, Inc., Madison, WI, USA) [81 (link),82 (link)] based on atomic scattering factors taken from the International Tables [83 ]. The Molecular graphics was prepared using Mercury CSD 2020 program [84 (link)]. The details concerning X-ray diffraction experiment and crystal structure refinement are located in Table 3. Cambridge Crystallographic Data Centre (CCDC) 2038741 contains the supplementary crystallographic data for this paper. The data can be obtained free of charge from The Cambridge Crystallographic Data Centre via www.ccdc.cam.ac.uk/structures.
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8

Crystal Structure Determination of Organic Compounds

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The crystal data were collected on a Bruker D8-Venture diffractometer with Mo-target (λ = 0.71073 Å) at 180 K for all compounds. Data were processed on a PC with the aid of the Bruker SHELXTL software package and corrected for absorption effects. All non-hydrogen atoms were refined anisotropically. The positions of hydrogen atoms were calculated and refined isotropically. The crystal data were deposited to the Cambridge Crystallographic Data Centre with deposition numbers of CCDC ; 1839688 (B1a), ; 1839689 (B1b), ; 1839690 (B2a), ; 1839691 (B2b), ; 1839692 (B3b), ; 1839693 (B3a), ; 1839694 (B4a), ; 1839695 (B4b), ; 1854311 (B5a), ; 1853312 (B5b). This data can be obtained free of charge from the Cambridge Crystallographic Data Centre via; www.ccdc.cam.ac.uk/data_request/cif.
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9

Crystal Growth and Structural Determination

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By slow evaporation technique the crystal was grown in ethyl acetate solvent. Diffraction data were collected on a Bruker D8 Quest diffractometer using graphite monochromated MoKα radiation (λ = 0.71073Å) at 300.2 (2) K with crystal size of 0.160 × 0.150 × 0.100 mm. Data were corrected for absorption effects using the multi-scan method (SADABS). The frames were integrated with the Bruker SAINT Software package using a narrow-frame algorithm. The structure was solved by Apex 3 software. The structure was solved and refined using the Bruker SHELXTL software package and successive Fourier difference synthesis and refined by full-matrix least-square procedure on F2 with anisotropic thermal parameters. All non-hydrogen atoms were refined (SHELXL-2018/3) and placed at chemically acceptable positions. Crystallographic data have been deposited with the Cambridge Crystallographic Data Centre as supplementary publication number CCDC 2127016. Copies of the data can be obtained free of charge via http://www.ccdc.cam.ac.uk or from the Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, UK; fax: þ44 1223 336 033: or e-mail: [email protected].
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10

Structural Characterization by XRD

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Powder XRD measurements were carried out on a diffractometer (Panalytical Xpert) with Cu Kα radiation (40 kV and 30 mA, λ = 1.540598 Å,). Crystallography data were collected by Bruker APEX II diffractometer with Mo (λ = 0.71073 Å) as source material. The structures of crystals were solved by using Bruker SHELXTL Software Package and refined by Full-matrix least-squares on F2. Non-hydrogen atoms were subjected to anisotropic refinement while hydrogen atoms were generated geometrically and allowed to ride in their respective parent atoms; they were assigned with appropriate isotropic thermal parameters and included in the structure factor calculations.
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