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15 protocols using anti cd47

1

Protein Expression Analysis in SKOV3 Cells

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To examine the expression of the proteins in both cell lines, SKOV3-CDDP and SKOV3 cells were seeded at 2 × 105 cells per well in 6-well plates and cultured overnight. The two cell lines were treated with PBS, miR497, miR497-HENPs, TP, TP-HENPs and miR497/TP-HENPs for 48 h. Then, 150 µl RIPA buffer (Sigma–Aldrich) was added and lysed on ice for 5 min. The lysate was collected and centrifuged at 12,000 g for 15 min at 4 °C. The protein content in the supernatant was quantified by a BCA protein assay kit. Protein samples were separated by SDS–PAGE and transferred to PVDF membranes, and the membranes were blocked with 5% blocking buffer for 1 h and then incubated overnight at 4 °C with the following primary antibodies: anti-calnexin, anti-TSG101, anti-CD9, anti-CD47, anti-GAPDH, anti-PI3K, anti-p-PI3K and anti-mTOR (purchased from Abcam) and anti-p-mTOR, anti-AKT, anti-p-AKT and HIF-α (obtained from CST). The membranes were washed three times, and then at room temperature, the secondary antibody was incubated for 1 h. All strips were visualized using a Bio–Rad Imaging System (Bio–Rad, USA).
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2

Western Blot Analysis of CD47 in Liver Tissue

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Liver tissues were homogenized in RIPA buffer (Sigma, St. Louis, MO, USA) plus protease and phosphatase inhibitors (Pierce, Waltham, MA, USA). After concentrations were measured using a BCA Assay (Pierce, Waltham, MA, USA), 30 μg protein/well was subjected to SDS-PAGE gel under reducing conditions and transferred onto a nitrocellulose membrane. After blocking, the membrane was incubated with anti-β-actin (1:5000 dilution; Santa Cruz, Dallas, TX, USA) and anti-CD47 (1:1000 dilution; Abcam, Cambridge, MA, USA) at 4 °C overnight. After washing, the membrane was incubated with horseradish peroxidase-conjugated secondary antibodies (Jackson Labs, Bar Harbor, ME, USA). The reaction was visualized by using an enhanced chemiluminescence system (Pierce, Waltham, MA, USA).
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3

Western Blot Antibody Validation

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Western blot analysis was performed as described [51 (link)]. Antibodies used were mouse anti-GAPDH (1:10000, ab8245), anti-SRSF10 (1:1000, ab77209), rabbit anti-E2F1 (1:1000, ab179445), anti-CD47 (1:1000, ab175388) from Abcam (Cambridge, UK), anti-IκBα (1:1000, 4814), anti-Phospho-IκBα (1:1000, 9246), anti-NF-κB p65 (1:1000, 8242), anti-Phospho-NF-κB p65 (1:1000, 3033) from Cell Signaling Technology (Danvers, MA, USA).
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4

Immunofluorescence Analysis of Cell Adhesion Molecules

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Cells (1 × 104/well) were seeded on 8-well chamber slides (Lab-Tech) after transfection. The cells were fixed, permeated and blocked. Then, they were incubated with the following antibodies: anti-VIM (1:200, Abcam), anti-ITGAV (1:1000, Cell Signaling Technology), anti-ITGB1 (1:1000, Cell Signaling Technology), anti-ITGB3 (1:500, Cell Signaling Technology) or anti-CD47 (1:200, Abcam). The secondary antibody, Alexa Fluor 488-conjugated goat anti-mouse IgG or anti-rabbit IgG (1:500, Invitrogen), was applied for 1 hour. Slides were mounted with antifading solution containing 4′-6′-diamidino-2-phenyl-indole (Vector Laboratories). Images were taken using a confocal microscope (Zeiss). All experiments were conducted in triplicate.
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5

Western Blot for Red Blood Cell Proteins

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Antibodies used were anti-XK(Thermo Fisher Scientific, PIPA540782), anti-EPB41 (Abcam, ab54597), anti-MPP1 (Abcam, ab96255), anti-CD47 (Abcam, ab3283), anti-band 3 (Santa Cruz Biotechnology, sc-133190), anti-Integrin β1 (Santa Cruz Biotechnology, sc-18887), anti-Glycophorin C (Santa Cruz Biotechnology, sc-59183), anti-GPA (Santa Cruz Biotechnology, sc-59182), and anti-Kell (Santa Cruz Biotechnology, sc-271070). All antibodies were used at 1:1,000 dilution. Original images of western blottings presented in the manuscript are shown in Supplementary Fig. 5.
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6

Western Blotting Analysis of Protein Expression

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Total protein was extracted from tissues and transfected cells using RIPA buffer including protease inhibitor cocktail (Cell Signaling Technology), and western blotting was carried out as described previously [42 (link)]. The primary antibodies used were as follows: anti-DHFR (1:400, Cell Signaling Technology), anti-ZEB2 (1:1000, Abcam), anti-E-cadherin (1:250, Abcam), anti-VIM (1:1500, Cell Signaling Technology), anti-ITGAV (1:1000, Cell Signaling Technology), anti-ITGB1 (1:2000, Cell Signaling Technology), anti-ITGB3 (1:2000, Cell Signaling Technology), anti-CD47 (1:2000, Abcam), and anti-β-actin (1:5000, Sigma-Aldrich).
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7

Protein Expression Analysis by Western Blot

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An equal amount of total protein was run on 12.5% SDS-PAGE, transferred to PVDF membranes (250 mA for 2 h), and probed with primary antibodies. The primary antibodies include anti-MMP2 (1:1000, 72 kDa, Sigma-Aldrich), anti-N-cadherin (1:1000, 140 kDa, ImmunoWay Biotechnology), anti-E-cadherin (1:1000, 135 kDa, ImmunoWay Biotechnology), anti-Vimentin (1:1000, 57 kDa, ImmunoWay Biotechnology), anti-ADAM9 (1:1000, 72 kDa, Affinity Biosciences), anti-Snail (1:1000, 29 kDa, ImmunoWay Biotechnology), anti-DNMT1 (1:1000, 183 kDa, Abcam), anti-CD47 (1:1000, 52 kDa, Abcam), and anti-GAPDH (1:1000, 37 kDa, Sigma-Aldrich). The protein bands of interest were captured after the secondary antibodies linked with peroxidase were bound to primary antibodies [26 (link)].
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8

Western Blot Analysis of CD47, Cdc42, and GAPDH

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For western blotting, cells or tissues were directly lysed in RIPA buffer (Cell Signaling Technology) containing a cocktail of protease inhibitors (Sigma, St. Louis, MO, USA). Total proteins were separated by SDS-PAGE electrophoresis and transferred onto BioTrace nitrocellulose membranes (Pall Corporation, San Diego, CA, USA). Then, membranes were blocked with 5% milk-TBST buffer (TBS plus 0.1% Tween-20) for one hour at room temperature and incubated with anti-CD47 (Abcam, Cambridge, UK), anti-Cdc42 (Abcam), or anti-GAPDH (internal control; Sigma) primary antibodies overnight at 4 °C. The membranes were washed with TBST buffer three times and incubated with corresponding secondary antibodies (anti-rabbit IgG or anti-mouse IgG; Cell Signaling Technology, Danvers, MA, USA) for one hour at room temperature. Protein detection was achieved using a Super Signal West Pico Kit (Thermo Fisher Scientific Inc., Anthem, AZ, USA), followed by quantitative densitometric analysis using Eagle Eye II software (London, England). The expression of a target protein was normalized to that of GAPDH, and each experiment was repeated three times.
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9

Apoptosis Signaling Pathway Inhibitors

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Chaetocin (#C9492, Sigma-Aldrich, St Louis, MO, United States), z-VAD-fmk (#ALX-260–020, Enzo, New York, NY, United States), N-acetyl-L-cysteine (NAC) (#A7250, Sigma-Aldrich) and SP600125 (#S5567, Sigma-Aldrich) were dissolved in DMSO to form the 10mM, 50mM, 0.5M and 20 mM solution respectively. These reagents were stored at −20°C. Primary antibodies against PARP (#9542), caspase-3 (#9662), cleaved-caspase-3 (#9661), caspase-8 (#9746), caspase-9 (#9508), BCL-2 (#15071), BCL-XL (#2764), MCL-1 (#4572), XIAP (#14334), JNK (#9252) and phospho-JNK (Thr183/Tyr185) (#4668) were purchased from Cell Signaling Technology (Beverly, MA, United States). Anti-c-Jun (#ab131497), anti-Ser63 phosphor-c-Jun (#ab28807), anti-CD47 (#ab9089) anti-α-tubulin (#ab233661) and β-actin (#ab8226) were purchased from Abcam (Cambridge, MA, United States), FITC anti-human CD47 (#323106) was purchased from Biolegend (San Diego, CA, United States). Anti-mouse immunoglobulin G (#B900620) and anti-rabbit immunoglobulin G (#B900610) horseradish peroxidase-conjugated secondary antibodies were purchased from Proteintech Group (Chicago, IL, United States).
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10

Multiplex Immunostaining of PD-L1 and CD47

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Multiplex staining of hPD-L1 and hCD47 co-expression on cancer tissues was performed using 4-color kit (WiSee Biotechnology), according to manufacturer's instruction. Three primary antibodies are anti-CD47 (Cat: ab218810, diluted 1:500, Abcam), anti-PD-L1 (Cat: 13684, diluted 1:400, CST) and anti-PanCK (Cat: CM351507, diluted 1:200, Gene Tech). After applied different primary antibodies (anti-CD47, anti-PD-L1 and anti-PanCK, sequentially), the secondary antibody (HRP conjugated) was added and incubated, followed by tyramide signal amplification (Cat: M-D110051, WiSee Biotechnology). After all antigens being labeled with different antibodies, DAPI (Cat: D1306, ThermoFisher) was used for nuclei staining. Pannoramic MIDI imaging system (3D HISTECH) was then used for scanning the stained slides. The number of target cells were analyzed by HALO software (Indica Labs).
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