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6 protocols using anti cd95 pecy7

1

Spleen and Bone Marrow Flow Cytometry

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In brief, spleens were prepared for flow cytometry by generating single cell suspensions. RBCs were lysed by Tris Ammonium Chloride. Single cell suspensions of bone marrow cells were prepared by flushing the marrow followed by RBC lysis. Resulting single cell suspensions of splenocytes or bone marrow cells were Fc blocked with Trustain FcX (anti-mouse CD16/32 clone 93- Biolegend) and stained with combinations of the following antibodies: anti-B220-PacBlue (RA3–6B2), GL7-FITC, anti-CD95-PeCy7 (Jo2), anti-CD4-Alexa Flour 700 (RM4–5), anti-CXCR5-biotin (2G8), anti-PD-1-PE (29F.1A12), anti-CD11c-BV421 (N418), anti-NK1.1-biotin (PK136), anti-Ly6G-BV711 (1A8), CD86-PeCy5 (GL-1), anti-CD44-BV605/APC (IM7), anti-CD62L-PeCy7 (MEL-14), anti-CD80-PE (16–10A1), anti-CD19-BV605 (6D5), anti-CD267-PE (8F10), anti-CD138-PeCy7 (281–2), and SA-PeCy5 from Biolegend; anti-CD43-FITC (S7), anti-Ly6C-FITC (AL-21), anti-CD11b-AF700 (M1/70), anti-CD90.2-biotin (53–2.1), anti-CD19-biotin (1D3), anti-CD40-FITC (HM40–3), anti-IgD-APC (11–26c.28), and SA-V500 from BD Biosciences. Viability staining was performed by incubating samples with Fixable Viability Dye (e780) from eBioscience. Data were acquired on an LSRII flow cytometer (BD Biosciences) and data were analyzed using FlowJo software (Tree Star).
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2

Phenotyping Lymphocyte Populations by Flow Cytometry

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Lymph nodes (axillary or popliteal) were collected in FACS buffer (PBS1X, 10%FCS, 2mM EDTA) on ice. Single-cell suspensions were obtained by mechanical disruption through a 70-mm cell strainer (BD Biosciences). Erythrocytes were lysed with 1 ml of ACK lysing buffer (Gibco). After incubation with 5 μg/ml of anti-CD16/32 (rat mAb 2.4G2, mouse Fc block BD) for 15 min at 4°C, cell surface antigens were stained for 30 min at 4°C. When a biotin antibody was used, the cells were then incubated with a streptavidin-fluorophore conjugate for 20 min at 4°C. Flow cytometric analysis was performed on a BD LSRFortessa. Antibodies used: from BD; Anti-IgM-e710 (R6-60.2, 550881), Anti-IgD-BV786 (11-26c.2a, 563618), Anti- T-and B-cell activation antigen-FTIC (GL7, 553666), Anti-Igλ1,2,3-BV650 (R26-46, 744526), Anti-CD95-PE-Cy7 (Jo2, 557653) streptavidin-BV711 (563262), streptavidin-AF647, from Biolegend; Anti-CD38-PB (90, 102719), Anti-CD138-BV421 (281-2, 142508), Anti-B220-BV605 (RA3-6B2, 103244) live/dead marker Zombie NIR (Biolegend, 423106) and from eBiosciences; Anti-T-and B-cell activation antigen-e660 (GL7, 50-5902-82), Anti-CD4-eF780 (RM4-5, 47-0042-82), Anti-CD8-eF780 (53-6.7, 47-0081-82), Anti-NK1.1-eF780 (PK136, 47-5941-82), Anti-F4/80-eF780 (BM8, 47-4801-82), Anti-TM4-Core-biot (5μg/mL) provided by A.T.M and L.S (Fred Hutchinson Cancer Research Center, Seattle).
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3

Multiparameter Flow Cytometry of Lymph Nodes

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Lymph nodes (axillary or popliteal) were collected in FACS buffer (1× PBS, 10% FCS, 2 mM EDTA) on ice. Single-cell suspensions were obtained by mechanical disruption through a 70-mm cell strainer (BD Biosciences). Erythrocytes were lysed with 1 ml ACK lysing buffer (Gibco). After incubation with 5 µg/ml anti-CD16/32 (rat mAb 2.4G2, mouse Fc block; BD Biosciences) for 15 min at 4°C, cells were stained for 30 min at 4°C. When a biotinylated antibody was used, the cells were then incubated with a streptavidin–fluorophore conjugate for 20 min at 4°C. Flow cytometric analysis was performed on a BD LSRFortessa and Symphony. Antibodies used: from BD Biosciences, anti-IgM-e710 (R6-60.2, 550881), anti-IgD-BV786 (11-26c.2a, 563618), anti-CD95-PE-Cy7 (Jo2, 557653), and streptavidin-BV711 (563262); from BioLegend, anti-CD38-PB (90, 102719), anti-B220-BV605 (RA3-6B2, 103244), and live/dead marker Zombie NIR (423106); and from eBiosciences, anti-T and -B cell activation antigen-e660 (GL7, 50-5902-82), anti-CD4-eF780 (RM4-5, 47-0042-82), anti-CD8-eF780 (53-6.7, 47-0081-82), anti-NK1.1-eF780 (PK136, 47-5941-82), anti-F4/80-eF780 (BM8, 47-4801-82), and anti-TM4-Core-biot (5 µg/ml) provided by Andrew T. McGuire and L. Stamatatos.
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4

Multiparameter Flow Cytometry of Spleen and Bone Marrow

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In brief, spleens were prepared for flow cytometry by generating single cell suspensions. RBCs were lysed by Tris Ammonium Chloride. Single cell suspensions of bone marrow cells were prepared by flushing the marrow followed by RBC lysis. Resulting single cell suspensions of splenocytes or bone marrow cells were Fc blocked with Trustain FcX (anti-mouse CD16/32 clone 93-Biolegend) and stained with combinations of the following antibodies: anti-B220-PacBlue (RA3-6B2), GL7-FITC, anti-CD95-PeCy7 (Jo2), anti-CD4-Alexa Flour 700 (RM4-5), anti-CXCR5-biotin (2G8), anti-PD-1-PE (29F.1A12), anti-CD11c-BV421 (N418), anti-NK1.1biotin (PK136), anti-Ly6G-BV711 (1A8), CD86-PeCy5 (GL-1), anti-CD44-BV605/APC (IM7), anti-CD62L-PeCy7 (MEL-14), anti-CD80-PE (16-10A1), anti-CD19-BV605 (6D5), anti-CD267-PE (8F10), anti-CD138-PeCy7 (281-2), and SA-PeCy5 from Biolegend; anti-CD43-FITC (S7), anti-Ly6C-FITC (AL-21), anti-CD11b-AF700 (M1/70), anti-CD90.2-biotin (53-2.1), anti-CD19-biotin (1D3), anti-CD40-FITC (HM40-3), anti-IgD-APC (11-26c.28) , and SA-V500 from BD Biosciences. Viability staining was performed by incubating samples with Fixable Viability Dye (e780) from eBioscience. Data were acquired on an LSRII flow cytometer (BD Biosciences) and data were analyzed using FlowJo software (Tree Star).
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5

Comprehensive Immunophenotyping of Mouse Immune Cells

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The following antibodies were utilized for flow cytometric analysis of mouse splenocytes or bone marrow cells: PacBlue-anti-B220 (RA3-6B2); Alexa Fluor 700-anti-CD4 (RM4-5); PE-anti-PD-1 (29F.1A12); PerCP-Cy5.5-anti-CD69 (H1.2F3); APC-Cy7- anti-CD25 (PC61); Cy5-anti-CD86 (GL1); PeCy7-anti-CD95 (FAS, Jo2); PeCy7-anti-MHC-II (M5/114.15.2); APC-anti-CD24 (HSA) (M1/69); Biotin-anti-Ly5.1 (BP-1) (6C3); FITC-anti-CD23 (B3B4); PE-Cy5-streptavidin (SA) were from purchased from BioLegend, San Diego, CA. Biotin-anti-CXCR5 (2G8) from BD Pharmingen, San Diego, CA. FITC-peanutagglutinin (PNA) from Vector Labs, Burlingame, CA. PE-anti-IgM (eB121-15F9); APC anti-CD93 (AA4.1); FITC-anti-F4/80 (BM8) from eBiosciences, San Diego, CA. The following antibodies were utilized for phosphoflow analysis of purified mouse B cells: PE-anti-Btk (pY223)/ItK (pY180) (N35-86); Alexa Fluor 647-anti-ERK1/2 (pT202/pY204) (20A); Pacific Blue-anti-p38 MAPK (pT180/pY182); Alexa Fluor 488-anti-Syk (pY348) (I120-722). Stained cells were analyzed using the BD LSR II flow cytometer (BD Biosciences, Franklin lakes, NJ). Data were acquired using FACSDiva software (BD Biosciences, San Jose, CA) and analyzed using FlowJo software (Tree Star, San Carlos, CA).
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6

Flow Cytometry of Mouse Immune Cells

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The following antibodies were utilized for flow cytometric analysis of mouse splenocytes or bone marrow cells: PacBlue-anti-B220 (RA3-6B2); Alexa Fluor 700-anti-CD4 (RM4-5); PE-anti-PD-1 (29F.1A12); PerCP-Cy5.5-anti-CD69 (H1.2F3); APC-anti-TCR Vα2 (B20.1); APC-Cy7- anti-CD25 (PC61); Cy5-anti-CD86 (GL1); PeCy7-anti-CD95 (FAS, Jo2); PeCy7-anti-MHC-II (M5/114.15.2); APC-anti-CD24 (HSA) (M1/69); Biotin-anti-Ly5.1 (BP-1) (6C3); FITC-anti-CD23 (B3B4); PE-Cy5-streptavidin (SA) were from purchased from BioLegend, San Diego, CA. Biotin-anti-CXCR5 (2G8); FITC-anti-CD11c (HL3); FITC-anti-CD43 (S7) from BD Pharmingen, San Diego, CA. FITC-peanut-agglutinin (PNA) from Vector Labs, Burlingame, CA. PE-anti-IgM (eB121-15F9); APC-anti CD93 (AA4.1); FITC-anti-F4/80 (BM8) from eBiosciences, San Diego, CA. Stained cells were analyzed using the BD LSR II flow cytometer (BD Biosciences, Franklin lakes, NJ). Data were acquired using FACSDiva software (BD Biosciences, San Jose, CA) and analyzed using FlowJo software (Tree Star, San Carlos, CA). Dead cells were quantified by flow cytometry using 4′,6-diamidino-2-phenylindole (DAPI) (Sigma-Aldrich, St. Louis, MO).
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