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9 protocols using nanoassemblr ignite

1

Lipid Nanoparticle Encapsulation of circRNAs

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The circRNAs were encapsulated with lipid nanoparticles (LNPs) according to a previously described process (Ickenstein and Garidel, 2019 (link)). First, the circRNA was diluted with PNI Formulation Buffer (Precision NanoSystems, #NWW0043) to a final concentration of 170 μg/ml. Then, the lab-prepared or commercial LNP (Precision NanoSystems) were mixed with the circRNA solution at the volume ratio of 1:3 through the Ignite NxGen Cartridge (Precision NanoSystems, #NIT0002) using NanoAssemblr Ignite (Precision NanoSystems). Then the LNP-circRNA formulations were diluted 40-fold with 1×PBS buffer (pH 7.2∼7.4) and concentrated by ultrafiltration with Amicon® Ultra Centrifugal Filter Unit (Millipore). The concentration and encapsulation rate of circRNAs were measured by the Quant-it RiboGreen RNA Assay Kit (Invitrogen, #R11490). The size of LNP-circRNA particles was measured using dynamic light scattering on a Malvern Zetasizer Nano-ZS 300 (Malvern). Samples were irradiated with a red laser, and scattered light was detected. The results were analyzed to obtain an autocorrelation function using the software Zetasizer V7.13.
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2

Liposomal Enzyme Encapsulation and Characterization

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In addition, 3.2 mg/mL of each LysA, LysB, isoamylase, and α-amylase was mixed to achieve a final total protein concentration of 12.8 mg/mL total protein in a buffer containing 50 mM glycine, pH 8.50, 200 mM NaCl, 0.5 mM MgCl2, 0.33 mM sodium citrate, 7.5 mM CaCl2, and 10% glycerol. Buffer components were purchased through Fisher Scientific. 1,2-Dioleoyl-sn-glycero-3-phosphocholine (33.5%), 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (33.5%), 1,2-dioleoyl-sn-glycero-3-phospho-L-serine (DOPS; 13%), and cholesterol (20%) were purchased through Avanti Polar Lipids and mixed in 100% ethanol to a final concentration of 3.3 mg/mL. The protein solution and lipid mix were assembled into liposomes using Precision NanoSystems NanoAssemblr Ignite (Vancouver, BC, Canada) and the payloaded liposomes were purified away from unencapsulated proteins and other material <750 kDa using TFF. Liposome diameter and polydispersity index were analyzed with the Malvern Zetasizer Ultra (Malvern Panalytical, Malvern, UK), and final protein compositions were evaluated with SDS-PAGE stain-free gels (Bio-Rad).
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3

Liposome Generation Using NanoAssemblr

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The liposomes were generated using the NanoAssemblr Ignite instrument (Precision NanoSystems). The DOPC, GalCer, GlcCer and cholesterol were dissolved in ethanol at a concentration of 12.5 mM. Then one volume of lipid mixtures at the appropriate ratios and three volumes of PBS were injected into the microfluidic cartridge at a total flow rate of 12 mL/min and a flow rate ratio of 3:1. The resulting liposomes were diluted in 50ml PBS and then concentrated to 1 mL by ultrafiltration using a 10 kDa Amico ultra-15 centrifugal filter units (MilliporeSigma, UFC910096). The size and concentration of each liposome were measured by nanoparticle tracking analysis on Zetaview instrument.
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4

Lipid Nanoparticle Encapsulation of mRNA

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The mRNA was encapsulated with lipid nanoparticles as previously described [10 (link)]. Briefly, the mRNA was diluted with an aqueous solution of mRNA at pH = 4.0 to a final concentration of 100 μg /ml. Then the solution of mRNA was rapidly mixed with lab-prepared lipids dissolved using Nano Assemblr Ignite (PrecisionNanoSystems). Lab-prepared lipids dissolved contained an ionizable cationic lipid, phosphatidylcholine, cholesterol, and PEG-lipid, and the ratio of which was 50:10:38.5:1.5 mol/mol. The mRNA-LNP formulations were diluted with Phosphate Buffered Saline (PBS) and concentrated by AmiconUltra Centrifugal Filter Unit (Millipore) to desired concentrations. The concentration and encapsulation rate of mRNA were measured by Quant-it RiboGreen RNA Assay Kit (Invitrogen, #R11490). The formulations were passed through a 0.22 μm filter and stored at 4°C. Lmix vaccine, an equal mass of multiple mpox virus antigen mRNA, was mixed after being encapsulated by lipid nanoparticles. Rmix vaccine, an equal mass of multiple mpox virus antigen line linearized plasmids were mixed, and then the mixture was transcribed into mRNA that formed a mixture of antigens mRNA.
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5

Lipid Nanoparticle Encapsulation of mRNA

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The mRNA was encapsulated with lipid nanoparticles as previously described [10 (link)]. Briefly, the mRNA was diluted with an aqueous solution of mRNA at pH = 4.0 to a final concentration of 100 μg /ml. Then the solution of mRNA was rapidly mixed with lab-prepared lipids dissolved using Nano Assemblr Ignite (PrecisionNanoSystems). Lab-prepared lipids dissolved contained an ionizable cationic lipid, phosphatidylcholine, cholesterol, and PEG-lipid, and the ratio of which was 50:10:38.5:1.5 mol/mol. The mRNA-LNP formulations were diluted with Phosphate Buffered Saline (PBS) and concentrated by AmiconUltra Centrifugal Filter Unit (Millipore) to desired concentrations. The concentration and encapsulation rate of mRNA were measured by Quant-it RiboGreen RNA Assay Kit (Invitrogen, #R11490). The formulations were passed through a 0.22 μm filter and stored at 4°C. Lmix vaccine, an equal mass of multiple mpox virus antigen mRNA, was mixed after being encapsulated by lipid nanoparticles. Rmix vaccine, an equal mass of multiple mpox virus antigen line linearized plasmids were mixed, and then the mixture was transcribed into mRNA that formed a mixture of antigens mRNA.
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6

Microfluidic Encapsulation of mRNA in Lipid Nanoparticles

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mRNAs were encapsulated in lipid nanoparticles by NanoAssemblr Ignite microfluidic cartridge technology (Precision Nanosystems). In brief, lipids were dissolved in ethanol at a molar ratio of 50:10:38.5:1.5 (ionizable lipid:DSPC:cholesterol:PEG2000 PE) and mRNA was prepared in 25 mM sodium acetate buffer (pH5.0) at 0.1 mg/ml. Then the lipid mixture and mRNA were mixed at an N/P ratio of 4 through the “Y” shape microfluidic cartridge at a total flow rate of 6 ml/min and a flow rate ratio of 3:1 (aqueous phase:organic phase). After formulation, the mRNA-LNP was dialyzed three times against sterile and Ca2 + /Mg2+ free PBS (Cat# 17-516F, Lonza) through a 3.5 K MWCO Slide-A-Lyzer dialysis cassette (Cat# 66330, Thermo Scientific), followed by concentration through a centrifugal filter YM30 (Cat# MRCF0R030, EMD Millipore). The mRNA-LNP was adjusted to 50 μg/ml with or without 10% sucrose (w/v) and aliquoted for different storage conditions. At least two independent preparations for each mRNA-LNP type were used in all experiments.
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7

Lipid Nanoparticle Formulation for mRNA Delivery

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All lipid components, such as ionizable lipids (DLin-MC3-DMA and SM102), trehalose glycolipids (TDO and TDB), phospholipids (DOPE and DSPC), lithocholic acid derivatives (n-butyl lithocholate, 3-methylpentyl lithocholate, iso-pentyl lithocholate), cholesterol, and DMG-PEG, were dissolved in a chloroform/methanol mixture solvent (1/1, v/v) at a concentration of 50 μg/μL. The lipid components were mixed in the molar ratios listed in Table 1 and Table S1 and concentrated under reduced pressure. Lipid mixtures and mRNA were dissolved in ethanol and citrate buffers (pH 4.0, 50 mM), respectively. mRNA⊂LNPs were formulated using NanoAssemblr® Ignite™ (Precision Nanosystems Inc., Canada) at a total flow rate of 10 mL/min with the mixing volume ratio (1:3) of lipid and mRNA solutions. In Table 1 and Table S1, the N/P ratio is directly proportional to the mol% of ionizable lipids, and the N/P ratio at 25 mol% is 3. The final mRNA⊂LNP were washed twice with 1X DPBS and concentrated using 624R Centrifuge (LABOGENE Co., Ltd., South Korea) with Amicon® Ultra-15 Centrifugal Filter (Merck Millipore, Germany).
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8

Lipid Nanoparticle Formulation for mRNA Delivery

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Lipid nanoparticles (LNPs) were prepared according to a reported protocol48 (link). Briefly, all lipid components were dissolved in ethanol at a molar ratio of 50:10:38.5:1.5 (SM-102; distearoylphosphatidylcholine cholesterol, 1,2-dimyristoyl-rac-glycero-3-methoxypolyethylene glycol-2000), and mRNAs were dissolved in sodium citrate buffer (50 mM; pH 4) solution at a charge ratio of N/P = 6. LNPs were formulated using NanoAssemblr® IgniteTM (Precision Nanosystems, Vancouver, Canada) by mixing aqueous and organic solutions at a ratio of 3:1 and a total flow rate of 10 mL/min. The LNP solution was concentrated by ultrafiltration using an Amicon Ultracentrifugal filter (UFC9030, Merck Millipore, Billerica, MA, USA), following the manufacturer’s instructions.
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9

Lipid Nanoparticle Formulation for mRNA Delivery

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LNPs were prepared as per a reported protocol36 (link). Briefly, all lipid components were dissolved in ethanol at a molar ratio of 25:25:10:38.5:1.5 (SM-102; 6,6′-trehalose dioleate; 1,2-dioleoyl-sn-glycero-3-phosphoethanolamin (DOPE); butyl lithocholate; and 1,2-dimyristoyl-rac-glycero-3-methoxypolyethylene glycol-2000 (DMG-PEG2000)), and mRNAs were dissolved at a charge ratio of N/P = 3 in sodium citrate buffer (50 mM; pH 4) solution37 . LNPs were formulated using NanoAssemblr® IgniteTM (Precision Nanosystems, BC, Canada) by mixing the aqueous and organic solutions at a ratio of 3:1 and a total flow rate of 10 mL/min. The solution of LNPs was concentrated by ultrafiltration using Amicon Ultra centrifugal Filter (UFC9030, Merck Millipore, MA, USA) following the manufacturer’s instructions.
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