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11 azido 3 6 9 trioxaundecan 1 amine

Manufactured by Merck Group
Sourced in Germany

11-Azido-3,6,9-trioxaundecan-1-amine is a chemical compound used in various laboratory applications. It serves as a key functional group for chemical synthesis and modification procedures. The compound's core function is to provide a versatile azido group that can undergo specific reactions, such as click chemistry. Further details on intended use should be obtained from technical documentation or consultation with subject matter experts.

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4 protocols using 11 azido 3 6 9 trioxaundecan 1 amine

1

Synthesis and Characterization of a Bifunctional Iron Complex

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The synthesis of the bis (TFP)ester of N,N´-bis-[2-hydroxy-5(carboxyethyl)benzyl] ethylenediamine-N,N´- diacetic acid, (1), [Fe(HBED-CC)]TFP2 iron complex was performed as described previously.60,61 Fifty-six milligrams of [Fe(HBED-CC)]TFP2 (0.095 mmol) was dissolved on 300 µL of dry DMF (Sigma-Aldrich, Taufkirchen, Germany). After addition of 20 µL of DIPEA (1.2 equiv.) and 41.8 mg of di-tert-butyl (((S)-6-amino-1-(tert-butoxy)-1-oxohexan-2-yl)carbamoyl)-L-glutamate (ABX, Radeberg, Germany) (0.9 equiv.) the solution was stirred for 5 h at room temperature. Finally, 50 µL of 11-Azido-3,6,9-trioxaundecan-1-amine (Sigma-Aldrich, Taufkirchen, Germany) (2.6 equiv.) was added and the mixture was stirred for 48 h at room temperature. The product (2) was isolated via RP-HPLC by using a linear gradient (A-B): 20–65% B in 16.2 min (Rt: 14.1 min); A: 0.1% TFA in H2O and B: 0.1% TFA in CH3CN, flow rate 5 mL/min. Maldi-MS (m/z) for [M + H]+ (calculated for C58H91N9O18): 1202.4 (1201.65).
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2

Synthesis of AuNP-Pili Bioconjugates

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The pili A109PrOF incorporating an NSAA, PrOF, containing an alkyne, were used to produce the AuNP-pili. 5 nm NHS-activated gold nanoparticles (Cytodiagnostics) were reacted with 11-Azido-3,6,9-trioxaundecan-1-amine (Sigma Aldrich) using the recommended protocol from Cytodiagnostics. In the last step, AuNP-linker-azide were obtained by buffer exchanging with PBS pH 7.4 (−) MgCl2 (−) CaCl2 using 100 kDa Amicon Ultra centrifugal filter units (three times, centrifuging at 14,000 x g for 15 min). Next, AuNP-linker-azide were coupled onto the pili A109PrOF through copper-catalyzed azide-alkyne cycloaddition reaction. Briefly, 20 µL of 50 mM THPTA and 10 µL of 20 mM CuSO4 were premixed for 30 min at room temperature. Later, 10 µL of 150 µM pili were diluted in 30μL of PBS pH 7.4 (−) MgCl2 (−) CaCl2 and 2.5 µL of AuNP-linker-azide were added to the mixture. Then, 1 µL of the mixture of THPTA/CuSO4 was added to the entire 40μL pili/AuNP mixture, are combined. Finally, 2.5 µL of 100 mM aminoguanidine and 2.5 µL of 100 mM sodium ascorbate are added. The reaction mixture was shaken at 500 rpm tabletop shaker (Santa Cruz Biotechnology) for 1 h. To stop the reaction and obtain the AuNP-linker-pili, the samples were buffer exchanged to 150 mM ETA pH 10.5 using 100 kDa Amicon Ultra centrifugal filter units (three times, centrifuging at 14,000 × g for 15 min).
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3

Synthesis and Characterization of NCA-Lys(TFA)

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N-Carboxyanhydride of ε-trifluoroacetyl-L-lysine (NCA-Lys(TFA)) was purchased from Chuo Kasei Co., Ltd. (Osaka, Japan). MeAIB was purchased from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan). 11-Azido-3,6,9-trioxaundecan-1-amine, Boc-L-glutamic acid 1-benzyl ester (Boc-Glu-OBzl), Boc-L-glutamic acid 5-benzyl ester (Boc-Glu(OBzl)-OH), RPMI 1640 medium, Dulbecco’s modified Eagle’s medium (DMEM), penicillin/streptomycin, BCH, and trypsin/EDTA were purchased from Sigma Aldrich Corporation (St. Louis, MO). Dimethylsulfoxide (DMSO), triethylamine (TEA), N-methyl-2-pyrolidone (NMP), BzlSer, Gln, 4-(4,6-dimethoxy-1,3,5-triazin-2-yl)-4-methylmorpholinium chloride (DMT-MM), and D-PBS(-) were purchased from Wako Pure Chemical Industries, Ltd. (Osaka, Japan). DMSO was purified by distillation under reduced pressure before use. Dibenzocyclooctyne-Cy5 (Cy5-DBCO) was purchased from Click Chemistry Tools (Scottsdale, AZ). Fetal bovine serum (FBS), and Hoechst 33342 were purchased from Thermo Fisher Scientific, Inc. (Waltham, MA). Bovine serum albumin (BSA) was purchased from Nacalai Tesque, Inc. (Kyoto, Japan).
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4

Azido-Functionalized Alginate Synthesis

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Medical grade, high guluronic acid content, high molecular weight (Mw) alginate (MVG) was purchased from FMC Biopolymers (Princeton, NJ). 200mg of alginate (0.8 micromoles, 1 eq.) was dissolved overnight in 200mL MES buffer (100mM MES, 300mM NaCl, pH=5.5). 11-Azido-3,6,9-trioxaundecan-1-amine (349 mg, 1.6mmole, 2000 eq, Sigma-Aldrich 17758) was added to the solution and the mixture was stirred for an additional 1 hour at room temperature. A mixture of 1-Ethyl-3-[3-dimethylaminopropyl]carbodiimide hydrochloride (306.7mg, 1.6 mmol, 2000eq, Sigma-Aldrich E7750) and sulfo-N-hydroxysuccinimide (173 mg, 800 umoles, 1000 eq, Thermo Fisher 24510) was added in three equal doses eight hours apart and the solution was stirred for an additional eight hours. The solution was dialyzed against 4L of water with successively lower salt content, changing solution 2–3 times per day. Dialyzed solutions were frozen and lyophilized under high vacuum. Final weight: 150–160 mg. Yield: 75–80%.
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