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14 protocols using gsk126

1

Regulate H3K27me3 with GSK-126 and GSK-J4

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In order to interfere with the production of H3K27me3 in pGCs, GSK-126 (#1346574-57-9, MedChemExpress, Monmouth Junction, NJ, USA) and GSK-J4 (#1373423-53-0, MedChemExpress, Monmouth Junction, NJ, USA) were chosen to be the antagonist and agonist of H3K27me3, respectively [29 (link)]. The doses of antagonist GSK-126 and agonist GSK-J4 were 6 and 2 nM. The negative controls of antagonist GSK-126 and agonist GSK-J4 were 6 and 2 nM of a dimethyl sulfoxide (DMSO) solvent that was used to dissolve the antagonist and agonist. The effect of the drugs was measured by WB. The performances of WB were the same as above. The antibodies of H3K27me3 were purchased from Millipore (#07-449, Millipore, Germany). GAPDH (Sigma, St. Louis, MO, USA) was used as reference protein. Each group featured three replications for cell treatments and two replications for WB.
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2

Optimizing Compound Delivery for Cell Studies

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DHT (4,5α-Dihydrotestosterone) was purchased from Sigma-Aldrich (St. Louis, MO, USA; A8380) and dissolved in ethanol at 10 μM to be used at a final concentration of 10 nM. MDV3100 (enzalutamide), from Santa Cruz Biotechnology (Dallas, TX, USA; sc-364354), was diluted in DMSO at 10 mM and used at 10µM. GSK126 (EZH2 inhibitor) was purchased from MedChemExpress (Monmouth Junction, NJ, USA; HY-13470), dissolved in DMSO, and used in a range of concentrations for 24 h. C2 Ceramide (N-acetoyl-D-erythro-sphingosine) was purchased from Avanti Polar Lipids (Alabaster, AL, US; 860502), dissolved in DMSO, and used at a final concentration of 20 μM. Doxycycline Hyclate (Dox, used at a final concentration of 0.25 μg/mL) and C16 Ceramide 1-phosphate (C1P, 860533P) were purchased from Sigma Aldrich (St. Louis, MO, US). An aqueous dispersion (in the form of liposomes) was prepared by sonicating C1P (1 mg) in sterile nanopure water (600 μL) on ice using a probe sonicator for six cycles of 8 s on and 5 s off until a clear dispersion was obtained. C1P concentration in the stock solution was 2.6 mM and a final concentration of 20 μM was used for all cellular assays. This procedure is considered preferable to C1P dispersions in organic solvents because lipid droplet formation is minimized and exposure of cells to alcohols or dodecane is avoided.
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3

Hepatoma Cell Culture and Treatment Protocols

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The human hepatoma cell lines PLC/PRF/5, Huh7, and Hep3B used in this study were purchased from the American Type Culture Collection (Manassas, VA, USA). PLC/PRF/5 cells were cultured in Roswell Park Memorial Institute (RPMI) 1640 medium, and Huh7 and Hep3B cell lines were cultured in Dulbecco’s modified Eagle medium (DMEM) supplemented with 10% fetal bovine serum at 37 °C and 5% CO2. Hepatoma cells were treated with recombinant interferon gamma (IFNγ) (Sino Biological Inc.), DZNep (MedChemExpress, Monmouth Junction, NJ, USA), or GSK-126 (MedChemExpress) for different times and at different concentrations.
Monocytes were selected from peripheral blood mononuclear cells using anti-CD14 magnetic beads (Miltenyi Biotec, Bergisch Gladbach, Germany) as described previously [33 (link)].
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4

Mammary Epithelial Organoid Assay

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Epithelial cells were harvested from the mammary glands of 8 to 12-wk-old MIC mice and grown as organoids as described previously (28 (link)). Roughly 10,000 mammary epithelial cells were cultured in eight-well chambers in the organotypic medium consisted of Epicult-B mouse medium (Stem Cell Technologies, 05610), knockout serum replacement (Gibco, 10828010), penicillin/streptomycin, 10 ng/mL EGF, 25 μg/mL insulin (Sigma, 10156), and 1 μg/mL hydrocorticone for 6 d to allow formation of acinar structures. Subsequently, doxycycline was added to growth media either in the presence or absence of drug treatments for 8 d, with media changes every 48 h. The following inhibitors, along with their working doses, were used: GSK-126 (MedChem Express, Cat#HY-13470, 2 μM), EPZ6438 (MedChem Express, Cat#13803, 2 μM), Torin-1 (Selleckchem, Cat#S2827, 250 nM), Rapamycin (MedChem Express, Cat#HY-10219, 100 nM), IWP-2 (STEMCELL Technologies, Cat#721220, 20 nM), MS-177 (MedChem Express, Cat#HY-148333, 5 μM), A-395 (MedChem Express, Cat#HY-101512, 2.5 μM), 3-Deazaneplanocin A hydrochloride (DZNep) (MedChem Express, Cat#HY-10442, 2 μM), and Pictilisib (GDC-0941) (MedChem Express, Cat#HY-50094, 5 μM).
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5

Murine Cytokine Signaling Pathway Assay

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Murine recombinant tumor necrosis factor-α (TNF-α) (#575204) and interleukin-1β (IL-1β) (#575102) were purchased from Biolegend. GSK126 was obtained from MedChemExpress. SB 203580 and PD98059 were purchased from AdooQ Bioscience.
The following primary antibodies were used : Lamin A/C (#2032), GAPDH (#2118), β-Actin (#4967), p65 (#6956), phospho-p65 (Ser536) (#3033), IKKβ (#2678), p53 (Rodent Specific) (#32532), phospho-p53 (Ser15) (#9284), IκBα (#4812), phospho-IκBα (#2859), NF-κB1 p105/p50 (#13586), NF-κB2 p100/p52 (#4882), phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (#4370), phospho-p38 MAPK (Thr180/Tyr182) (#4511), phospho-SAPK/JNK (Thr183/Tyr185) (#4668), DYKDDDDK Tag (#2368), phospho-histone H2A.X (Ser139) (#9718), and acetyl-p53 (Lys379) (#2570), CDK6 (#3136), Ezh2 (#5246), RelB (#4922), all purchased from Cell Signaling Technology, and p21 (#sc-6246), which was purchased from Santa Cruz. Phospho-p53 (Ser20) (# PA5–104741), phospho-p53 (Ser37) (#HY-P80843) and phospho-RelA/p65 (Ser276) (#NB100–82086) antibodies were purchased from Invitrogen, MedChemExpress and Novus Biologicals, respectively.
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6

Protein Expression Profiling in Cells

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Cell Signaling (Beverly, MA) antibodies: EGF receptor variant III (EGFRvIII) (Cat# 64952), p-Akt (S473; Cat# 4060), p-NDRG1 (T346; Cat# 5482), Rictor (Cat# 2114), 5-methylcytosine (5-mC) (Cat# 28692), DNMT3A (Cat #3598), acetylated-lysine (Cat# 9441), H3 p.K27me2 (Cat# 9755), H3 p.K27me3 (Cat# 9733), Histone H3 (Cat# 4499), EZH2 (Cat# 5246), FAK (Cat# 13009), p-FAK (Y397; Cat# 8556), β-actin (Cat# 3700), GAPDH (Cat# 5174), HRP-linked anti-rabbit IgG (Cat# 7074) and HRP-linked anti-mouse IgG (Cat# 7076). Santa Cruz (Dallas, TX) antibodies: p-PKC α (S657; Cat# sc-377565). GeneTex (Irvine, CA) antibodies: 5-mC (Cat# GT4111). Thermo Fisher antibodies: GRIA1 (Cat# PA5-95207). DAKO (Glostrup, Denmark) antibodies: Synaptophysin (Cat# M731529). Millipore (Burlington, MA) antibodies: Nestin (Cat# MAB5326).
Reagents used are sodium acetate (Sigma; Cat # S5636), Trichostatin A (TSA) (Sigma; Cat# T1952), PP242 (Cayman Chemical, Ann Arbor, MI; Cat# 13643), Akti-1/2 (Calbiochem, La Jolla, CA; Cat# 124018), Bisindolylmaleimide I (Bis-I) (Santa Cruz; Cat# sc-24003), GSK 650394 (Tocris Bioscience, Bristol, UK; Cat# 3572/10), GSKJ4 (Sigma; Cat# T1952), GSK126 (MedChem Express, Monmouth Junction, NJ; Cat# HY-13470), GSK2256098 (Selleck Biotech, Kanagawa, Japan; Cat# S8523) and Philanthotoxin-7,4 (PhTx-74) (Abcam, Cambridge, UK; Cat# ab120257).
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7

Autophagy Regulation by EZH2 Inhibition

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We purchased anti-microtubule-associated protein LC3, P62, CD63, and BECN1 (beclin1, an autophagosome initiator) antibodies from R&D Systems (Minneapolis, MI, United States). Cell Signaling Technology (Danvers, MA, United States) provided the following antibodies: anti-EZH2 (#5246), anti-mTOR (#2983), anti-p-mTOR (#5536), anti-S6K1 (#2708), anti-p-S6K1 (#9204), anti-TSG101 (#28405), and anti-Ki67 (#9449). GSK126 (EZH2inhibitor) (10 μM), PQR620 (50 nM) and bafilomycin A1 (Baf A1, an autophagosome-lysosome fusion inhibitor) (100 nM) were purchased from MedChem Express (Monmouth Junction, NJ, United States). EZH2 plasmids were purchased from Shanghai Genechem Co., Ltd.
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8

Regulation of H3K27me3 by MIR143 in pGCs

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The GSK-126 (#1346574-57-9, MedChemExpress, United States) and GSK-J4 (#1373423-53-0, MedChemExpress, United States) were used as H3K27me3 antagonist and agonist, respectively. GSK-126 is a highly selective inhibitor of H3K27 methyltransferase EZH2 that reduces global H3K27me3 levels [46], whereas GSK-J4 is a potent dual inhibitor of H3K27me3/me2-demethylases JMJD3/KDM6B and UTX/KDM6A, which leads to an increase in the total nuclear H3K27me3 levels (Kruidenier et al., 2012 (link)). In this research, 6 nM GSK-126 was used to effectively inhibit H3K27me3, and 2 nM GSK-J4 was employed to effectively activate H3K27me3, as previously established (Zhong et al., 2020 (link)). The treatments for each group were triplicated, while for WB, each group contained two replicates.
The MIR143 mimics and inhibitors were designed and synthesized by RiboBio (Guangzhou, China). The concentrations of the MIR143 mimics (MIR143) were set at 25, 50, and 75 nM and the MIR143 inhibitors (siMIR143) were set at 50, 75, and 100 nM. The mimic controls (MNC) and inhibitor controls (siNC) had the same concentrations of mimic and inhibitor. The optimal transfected concentration was confirmed via stem–loop qPCR (Zhang et al., 2017 (link)) to quantify the MIR143 expression in pGCs. Both the transfection and qPCR of each group were technically triplicated. The primers of MIR143 are listed in Supplementary Table 1.
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9

AIFM1 siRNA Knockdown and GSK126 Treatment

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GSK126 was purchased from Medchemexpress (New Jersey, USA) and dissolved in DMSO that was used as the vehicle control in all experiments. For knockdown studies, siRNA molecules were purchased from Shanghai Gene Pharma (Shanghai, China): Negative control (5′-UUCUCCGAACGUGUCACGUTT-3′), AIFM1_1 (5′-GGAACAUCUUUAACCGAAUTT-3′), AIFM1_2 (5′-GCAGUGGCAAGUUACUUAUTT), AIFM1_3 (5′-CGUACUGGCAUCAGUCAAUTT-3′). Cells were reverse transfected using Lipofectamine RNAimax according to the manufacturer's instructions 48–72 hr prior to treatment with GSK126. The pan caspase inhibitor Z-VAD-FMK (SM Biochemicals LLC, Anaheim, CA, USA) was used in apoptosis assays.
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10

EZH2 Inhibition and NOTCH1 Activation

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Cells were cultured with the EZH2 inhibitor GSK126 (HY-13470, Medchemexpress, New Jersey, USA; 10 μM, 50 mM in dimethyl sulfoxide). Cells were cultured with the NOTCH1 signaling agonist Jagged-1 (10 μg/mL; 40A-0157T, Adipogen, San Diego, CA, USA) (Lee et al., 2013). Jagged-1 was injected intraperitoneally at a dose of 400 ng/400 mL in vivo (Schmid et al., 2011).
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