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8 protocols using ab32443

1

Immunoblotting Analysis of Cellular Proteins

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Proteins in total cell lysates were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS‐PAGE) and then transferred onto polyvinylidene fluoride membranes (PVDF, Millipore). PVDF was incubated with primary antibodies against eIF5a (ab32443; Abcam), CBL (ab52855; Abcam), or β‐actin (A5441; Sigma‐Aldrich LLC) overnight at 4°C. Subsequently, horseradish peroxidase‐conjugated goat anti‐rabbit IgG or goat anti‐mouse IgG was applied at room temperature for 2 hours. Membranes were analyzed by a ChemiDoc XRS + image analyzer (Bio‐Rad).
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2

Protein Expression Analysis in Cell Lysates

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Tissue homogenates and cells were treated with RIPA lysates (Beyotime, China), and supernatants containing proteins were collected by centrifugation. Protein content was assessed by BCA detection kit (EMD Millipore). SDS-PAGE was performed with the same amount of protein samples in each lane, and then the isolated proteins were electrotransferred to PVDF membrane (Millipore). 5% skimmed milk powder was used for blocking the membranes, and then the corresponding primary antibody (eIF5A (1 : 1000, ab32443, Abcam); FANCD2 (1 : 1000, ab108928, Abcam); SLC7A11 (1 : 1000, ab216876, Abcam); HSPB1 (1 : 1000, ab109376, Abcam); Bax (1 : 1000, ab53154, Abcam); Bcl-2 (1 : 1000, ab32124, Abcam); cleaved caspase-3 (1 : 1000, ab32042, Abcam); cytochrome C (1 : 1000, ab133504, Abcam); β-actin (1 : 1000, ab8226, Abcam)) was applied overnight at 4°C. Following that, the membranes were treated for 2 h with the corresponding secondary antibody (Goat Anti-Rabbit IgG H&L (1 : 2000, ab6721, Abcam) and Rabbit Anti-Mouse IgG H&L (1 : 2000, ab6728, Abcam)). The transfer protein on membranes was developed with electrochemiluminescence (ECL, Thermo Fisher Scientific, USA)). Grayscale of the strips was assessed by ImageJ 1.48v software (NIH).
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3

Antibody Characterization for Protein Expression

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Antibodies directed at eIF5A1 (rabbit monoclonal (EP526Y): ab32443) and eIF5A2 (mouse monoclonal (1E7): H00056648-M01) were purchased from AbCam and Abnova, respectively. Anti-Src and phospho-Src (Tyr416) antibodies were from Cell Signaling Technology. Anti-GAPDH antibody was from Abcam, anti-survivin antibody was from Biolegend, anti-tubulin, DHPS and DOHH antibodies were from Sigma, anti-KRas antibody was from Santa Cruz Biotechnology (sc-30) and anti-PEAK1 antibody was from Millipore. The antibody specifically recognizing hypusinated eIF5A1 (NIH353) was a kind gift from Dr. Myung-Hee Park (NIH), which has been validated for use in western blotting [35 (link)] and immunohistochemistry [5 (link), 36 (link)] in human as well as mouse tissues and cell lines. GC7 (N1-guanyl-1, 7-diaminoheptane) was purchased from Calbiochem, CPX (ciclopirox olamine) was from Santa Cruz Biotechnology. Cisplatin was purchased from Enzo Life Sciences, and gemcitabine was from Eli Lilly and used as described previously [30 (link)]. Human pancreatic cancer tissue arrays were purchased from US Biomax (PA2081a except for DOHH staining, where PA803 was used).
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4

Immunohistochemical Analysis of Cellular Markers

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Slices were dewaxed and hydrated. Endogenous catalase was removed by H2O2. The slices were blocked for 30 min at 37°C with 5% BSA solution (P0220, Beyotime). Following that, the sections were reacted with primary antibody [eIF5A (1 : 250, ab32443, Abcam); FANCD2 (1 : 100, ab108928, Abcam); SLC7A11 (1 : 500, ab216876, Abcam); HSPB1 (1 : 500, ab109376, Abcam)] overnight at 4°C. The sections were incubated with the secondary antibody for 30 min. Then the slides were treated for 5 min with diaminobenzidine (DAB, Beyotime, China). After restaining for 5 min with hematoxylin, the slices were dehydrated, made transparent, and finally sealed with neutral resin. The results were observed with an optical microscope (Olympus Corporation).
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5

Culturing Pancreatic Cancer Cell Lines

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The human PC cell lines Panc‐1 and BxPc‐3 were obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA) and cultured in DMEM supplemented with 10% foetal bovine serum (FBS) and 1% antibiotic/antimycotic (Life Technologies, Carlsbad, CA, USA). The cells were maintained at 37°C in a humidified 5% CO2 atmosphere. Antibodies against sHH (ab53281), SMO (ab5694), PTCH (ab53715), Gli‐1 (ab49314), GAPDH (ab8245) and EIF5A (ab32443) were purchased from Abcam (Cambridge, MA, USA). Recombinant sHH was obtained from R&D Systems (Minneapolis, MN, USA).
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6

Immunohistochemical Analysis of eIF5A in Pancreatic Cancer

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Human pancreatic cancer tissue array was purchased from US Biomax as described above. PDX-1-Cre:LSL-KRASG12D mouse pancreas sections were provided by A. M. Lowy. Samples from patients BK-17 and BK-19 were collected and processed as described previously [30 (link)], in accordance with UCSD (La Jolla, CA) Institutional Review Board (IRB) #071136X. Determination of eIF5A1, eIF5A2 and hypusinated eIF5A1 protein expression was performed as described previously using specific antibodies (ab32443 (Abcam) for eIF5A1, H00056648-M01 (Abnova) for eIF5A2 and NIH353 for hypusinated eIF5A1) [30 (link), 35 (link), 36 (link)]. Images were collected with a Leica DM2500 microscope using a 40x objective lens.
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7

Western Blot Profiling of Apoptosis and EMT

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Total proteins were extracted using RIPA buffer, and quantified with a BCA Protein Assay Kit (Tiangen, Beijing, China). 20 μg of proteins were taken for SDS-PAGE electrophoresis, and then electrotransferred onto a PVDF membrane. The membrane was blocked with 5% non-fat milk for 1 h, incubated with the specific primary antibody at 4 °C overnight and incubated with the second antibody for 1 h at room temperature. ECL development was performed after washing the membrane through TBST.
The primary antibodies used in this study were as follow: anti-Bcl2 (1:1000, ab32124), anti-Bax (1:1000, ab32503), anti-p53 (1:1000, ab32389), anti-E-cadherin (1:1000, ab194982), anti-SNAL2 (1:1000, ab180714) and anti-eIF5A (1:1000, ab32443) were rabbit monoclonal antibodies and purchased from Abcam (Cambridge, MA, USA). Anti-Caspase3 (1:1000, ab13847) and anti-N-cadherin (1:1000, ab18203) were rabbit polyclonal antibody and purchased from Abcam. Anti-GAPDH (1:500, ab8245, Abcam) and anti-Vimentin (1:1000, ab8978) were mouse monoclonal antibodies and purchased from Abcam.
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8

Protein Expression Analysis of Inflammasome Pathway

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Lysed samples collected by Radio-Immunoprecipitation Assay buffer (Beyotime) were measured by a bicinchoninic acid protein assay kit (Thermo Fisher Scientific). The proteins were separated using 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to a nitrocellulose membrane which was then covered with 5% skim milk for overnight incubation with anti-pro-caspase-1 (ab179515, Abcam), gasdermin D (GSDMD; 20770-1-AP, Proteintech), plasma-membrane-bound pannexin-1 (PANX1; 12595-1-AP, Proteintech), p-p65 (3033, Cell Signaling Technology), p65 (ab86299, Abcam), eIF5A (ab32443, Abcam), and glyceraldehyde-3phosphate dehydrogenase (ABclonal, A19056, 1:1000). Next, horseradish peroxidase-conjugated secondary antibody was added for 1.5 h and enhanced chemiluminescence-developed bands were imaged using Tanon 5200 (Tanon, China) and analyzed using ImageJ software.
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