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15 protocols using s nitrosylated protein detection assay kit

1

S-nitrosylated Protein Detection in Embryos

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Protein S-nitrosylation in the neural tissues of E10.5 embryos was assessed using an S-nitrosylated Protein Detection Assay kit (Cayman Chemicals, Ann Arbor, MI), following the manufacturer’s instructions. Briefly, neural tissues of E10.5 embryos were dissected using fine scissors under a dissecting microscope. The tissues were homogenized in lysis buffer (Buffer A) containing Blocking Agent, centrifuged to remove debris, and precipitated with acetone. The precipitated protein samples were resuspended in Buffer B containing Reducing and Labeling agents (biotin), and incubated for one hour at room temperature. The labeled protein samples were precipitated with acetone and resuspended in a buffer for detection using Western blotting with avidin-HRP. Signals were captured and measured using UVP Bioimage system (UVP, Upland, CA).
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2

Quantifying S-nitrosylated Proteins

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S-nitrosylated Protein Detection Assay Kit (Cayman, USA) based on the “Biotin-switch” method [49 (link)] was used for S-nitrosothiol detection according to the manufacture's instruction. All steps were done with minimal light exposure. Briefly, 100–250 μg protein lysates were extracted from SKOV3 cells treated with DETA-NONOate (50 μM) or L-NAME (1 mM). PKM2 protein was purified by immunoprecipitation (TR0064.0, ThermoFisher Scientific, Waltham, MA) and its free thiols were blocked by blocking agent. S-nitrosothiols in the protein were reduced to free thiol(s) and subsequently covalently labeled with maleimide-biotin. After concentration measurement and dilution with SDS loading buffer, the labeled proteins were denatured at 95°C. Samples were sent to immunoblotting with HRP-detected reagent and visualized by the eECL Western Blot Kit (#P90720, Millipore).
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3

Quantification of S-Nitrosylated Transglutaminase 2

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The amount of S-nitrosylated TG2 in myocytes was determined by biotin-switch method. The S-nitrosylated cysteine residues in TG2 were biotinylated using an S-nitrosylated Protein Detection Assay Kit (Cayman Chemical Co., Ann Arbor, MI) according to the manufacturer’s instructions. Biotinylated proteins were isolated using streptavidin-conjugated magnetic beads (Dynal Biotech, Oslo, Norway). Then beads were washed with a buffer containing 50 mM Tris-Cl, pH 8.0; 150 mM NaCl, 1 mM EDTA, and 1% Triton X-100. TG2 was detected using anti-TG2 polyclonal antibodies (Neomarkers, Fremont, CA). Total TG2 levels of the samples were determined before isolation of biotinylated proteins. The S-nitrosylated vs. total TG2 ratio was determined using the ImageJ software.
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4

S-Nitrosylated Protein Detection Assay

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The S-Nitrosylated Protein Detection Assay Kit (Cayman Chemicals, Ann Arbor, USA) was used and involved the following steps: (1) RBC lysis and blocking of free thiol (SH) groups; (2) cleavage of S-NO bonds present in the sample; and (3) biotinylation of SH groups. Protein concentration of the samples was determined using the DC-Protein Assay Kit (BioRad, Munich, Germany) and 50 µg protein was loaded into the lanes of a 3–8% Tris-acetate gel (BioRad, Munich, Germany). Proteins were separated for 1 h with constant 90 mA according to their charge and mass in a 1 x XT Tricine running buffer (BioRad, Munich, Germany). Separated proteins were transferred to a polyvinylidene difluoride membrane (0.45-mm pore size) and the membrane was blocked in 2% BSA in TBS containing 0.1% Tween® 20 prior to incubation with horseradish peroxidase (dilution 1:2000). The immunoreactive bands were developed using an enhanced chemiluminescence kit (Thermo Scientific, Darmstadt, Germany) and band intensities were calculated in ImageJ software (National Institutes of Health, Bethesda, USA) (adapted to [24 (link)]).
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5

Detecting S-nitrosylated H-Ras Proteins

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We used the S-nitrosylated Protein Detection Assay Kit (Cayman Chemical, Cat: 10006518) to detect nitrosylated H-Ras in the immunoprecipitated H-Ras preparation. Biotin-labeled NO-H- Ras was analyzed by the Western blot assay [immunolabeled by enhanced chemiluminescence (ECL) Streptavidin HPR, Amersham Biosciences, UK)] followed by visualization with ECL (Amersham Biosciences, UK) and analysis by densitometric scanning. Total H-Ras was detected after stripping the nitrocellulose membrane and incubation with the anti-H-Ras primary antibody (Abcam, dilution: 1:4000). Immunolabeled bands were visualized using ECL and analyzed by densitometric scanning.
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6

Detecting S-Nitrosylated Proteins via Biotin Switch

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Expression of S-nitrosylated proteins in cells was detected by the biotin switch method using an S-Nitrosylated Protein Detection Assay Kit (CAYMAN CHEMICAL COMPANY) in combination with fluorophore labeling and visualization by confocal microscopy [9 (link)].
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7

S-nitrosylated Protein Detection Assay

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S-nitrosylated protein was detected using a biotin switch assay according to the instructions of a S-nitrosylated Protein Detection Assay Kit (Cayman Chemical, Ann Arbor, MI, USA)17 (link). Firstly, the free sulfhydryl group in the sample was blocked with methyl methanethiol sulfonate (MMTS). Secondly, the excess blocking agent was removed by acetone precipitation, and the thiol nitroso group (-SNO) was selectively reduced to free thiol by ascorbate. Finally, biotin-HPDP was added to label the newly synthesized thiol group. The biotin-labeled protein was adsorbed by streptavidin-agarose, subjected to denaturing polyacrylamide gel electrophoresis (SDS-PAGE).
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8

Biotin-switch S-nitrosylated Protein Detection

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Protein was extracted according to the manufacturer's specification S-nitrosylated Protein Detection Assay Kit (Cayman, USA), which is based on the “Biotin-switch” method as described previously [12 (link)].
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9

S-Nitrosylated Protein Detection

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As described previously (Zhou et al, 2019 (link)), proteins were extracted according to the manufacturer’s specification S-Nitrosylated Protein Detection Assay Kit (Cayman, USA), which is based on the “Biotin-switch” method.
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10

Quantifying Akt Kinase Activity

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Proteins were extracted according to the manufacturer's specification S‐Nitrosylated Protein Detection Assay Kit (Cayman, USA) which is based on the ‘Biotin‐switch’ method as described previously.11 Akt activity was determined in a kinase reaction using recombinant GSK‐3α as substrate.24 Two µl GSK‐3α protein/ATP mixture was added into 50 µl kinase buffer and incubated at 30°C for 14 hours. Phosphorylation of the GSK‐3α can be analysed by Western blot analysis using the phospho‐GSK‐3α‐specific antibody. The level of phospho‐GSK‐3α was calculated to represent Akt activity.
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