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5 protocols using dako antibody diluent solution

1

Cartilage Immunostaining in C57BL/6 Mice

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Serial sections from previously DMM-operated C57BL/6 mice were stained with safranin O according to standard protocols [25 (link)]. Cartilage immunostaining was performed on 5 μm thick sections, which were deparaffinised, hydrated, antigen retrieved and blocked as previously described [22 (link)]. Sections were incubated overnight at 4 °C with Cy5.5-1-11E-scFv or control Cy5.5-C7-scFv (10 μg/ml) in DAKO antibody diluent solution (Dako, Cambridge, UK). The pericellular matrix was stained using the rat anti-heparan sulphate proteoglycan antibody (Millipore, Watford, UK) followed by the Alexa-Fluor-488 labelled anti-rat IgG (Life Technologies, Paisley, UK). Slides were viewed under the LSM 510 Meta (Zeiss, Cambridge, UK) using the 488 nm excitation laser to visualize the Alexa-488 label and the 633 nm excitation laser to visualize the Cy5.5-label.
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2

Immunofluorescence Staining Protocol

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5 × 10 [3 (link)] cells were plated into 16 well chamber slides (Bio-Tek, Nunc, Winooski, VT), fixed with methanol/ethanol 1:1 vol for 5 min, and blocked with 5% goat serum (Thermo Fisher; Minneapolis, MN). Subsequently, slides were incubated with primary antibody in Dako antibody diluent solution (Dako, Camarillo, CA) for 1 h at room temp. Slides were washed with 1X TBS-T (Dako, Camarillo, CA), then incubated with secondary antibody (anti-rabbit Oregon green 488 or anti-mouse Alexa red 594 from Invitrogen, Carlsbad, CA) in the dark for 1 h at room temp. Slides were washed with 1X TBS-T and double deionized water and subsequently counterstained with DAPI (1 μg/ml, Santa Cruz Biotechnology, Santa Cruz, CA). Slides were mounted using Fluorogel mounting medium (Electron Microscopy Sciences, Hatfield, PA). Fluorescence microscopy was performed using Zeiss microscope and AxiovisionRel 4.8 software.
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3

Confocal Analysis of Rsad2 Protein

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Confocal analysis was conducted as previously described24 (link). After fixation for 10 min in 4% paraformaldehyde in PBS, cells were washed in 1% Tween20/PBS and permeabilized with 0.1% Triton-X 100 (Sigma-Aldrich) in PBS. Cells were then incubated in 5% NGS in room temperature for blocking. After washing with 1% Tween20 in PBS, cells were incubated for 24 h at 4 °C with an anti-Rsad2 antibody (Abcam). After further washing in 1% Tween20 in PBS, cells were stained for 2 h at room temperature with a secondary antibody (Alexa fluor 488 or 555-conjugated anti-mouse Ab (DAKO, Santa Clara, CA, USA)) in DAKO antibody diluent solution (DAKO). Cells were then resuspended in DAPI (DAKO). Confocal microscopy was performed using a Leica TCS-NT SP equipped with argon, krypton, and helium/neon lasers, and a spectrophotometer was used to separate the detection channels of Alexa fluor488 (450–500 nm) and Alexa fluor555 (580–660 nm).
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4

Immunostaining Lung Tissue and Endothelial Cells

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Lung tissues were fixed with 4% paraformaldehyde and dehydrated with a 15% sucrose solution followed by 30% sucrose solution until the lung tissues were settled at the bottom. Tissues were then embedded in Tissue-Tek optimal cutting temperature compound (Sakura Finetek, Torrance, CA), and 5-μm thin sections were cut. The sections were fixed in ice-cold acetone for 10 minutes, blocked with Dako antibody diluent solution (Agilent, Santa Clara, CA), and stained overnight at 4 °C with rat anti-mouse CD31 antibody (5 µg/mL), rabbit polyclonal anti-murine TF antibodies (5 µg/mL), and murine anti-human α-smooth muscle actin (α-SMA; 5 µg/mL, cross-reacts with murine α-SMA), followed by Alexa-488-, Alexa-594-, and Alexa-647-conjugated secondary antibodies. The nuclei were stained with DAPI (5 µg/mL). To immunostain cultured endothelial cells, the cells were fixed in 2% paraformaldehyde and stained with antibodies against goat anti-human VE-cadherin (5 µg/mL) and EPCR (endothelial cell protein C receptor) mAb (JRK1500, 5 µg/mL); the nuclei were stained with DAPI. Confocal images were obtained using an LSM 510 confocal system (Carl Zeiss). Immunostained tissue sections or cells were viewed using a Plan-APOCHROMAT 63.3/1.4 NA oil objective lens.
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5

Multicolor Immunofluorescence Staining of Lung Tissues

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Lung tissues were fixed with 4% paraformaldehyde (PFA) and dehydrated with a 15% sucrose solution followed by 30% sucrose solution until the lung tissues were settled at the bottom. Tissues were then embedded in Tissue-Tek optimal cutting temperature compound (Sakura Finetek, Torrance, CA), and 5 μm-thin sections were cut. The sections were fixed in ice-cold acetone for 10 min, blocked with Dako antibody diluent solution (Agilent, Santa Clara, CA), and stained overnight at 4°C with rat anti-mouse CD31 antibody (5 μg/ml), rabbit polyclonal anti-murine TF antibodies (5 μg/ml), and murine anti-human α-SMA (5 μg/ml, cross-reacts with murine α-SMA), followed by Alexa-488-, Alexa-594-, and Alexa-647-conjugated secondary antibodies. The nuclei were stained with DAPI (5 μg/ml). To immunostain cultured endothelial cells, the cells were fixed in 2% PFA and stained with antibodies against goat anti-human VE-cadherin (5 μg/ml) and EPCR mAb (JRK1500, 5 μg/ml); the nuclei were stained with DAPI. Confocal images were obtained using an LSM 510 confocal system (Carl Zeiss). Immunostained tissue sections or cells were viewed using a Plan-APOCHROMAT 63.3/1.4 NA oil objective lens.
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