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6 protocols using anti aldh1l1

1

Western Blot Analysis of Neural Biomarkers

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Protein lysates (15–75 μg) were resolved on 12% Bis-Tris or 4–12% gradient Bis/Tris gels (Life Technologies) and the proteins were transferred to nitrocellulose membranes (Bio-Rad). For amyloid-ß western blot analysis, the membranes were cross-linked with 0.5% glutaraldehyde solution before blocking. Western blot results were visualized using enhanced chemiluminescence (ECL). Signals were captured using ChemiDoc imaging system (Bio-Rad) and quantified using ImageJ software (NIH). The following primary antibodies were used (dilutions): anti- Aβ (1:100, 6e10; Signet); anti-Tuj1 (1:200, Abcam, ab24629); anti-MAP2 (1:200, Cell Signaling, 4542); anti-GFAP (1:100, Neuromap, N206A/8); anti-p-tau AT8 (1:30, Thermo Scientific, MN1020), p-tau PHF-1 (1:200, Abcam, ab66275), CD68 (1:200, BD Bioscience, 556059), CD11b (1:200, EMD Millipore, MM_NF-MABF515), anti-ALDH1L1 (1:200, EMD Millipore), Cy5 anti-mouse secondary antibody (1:400, Jackson Immunoresearch, 715-175-150).
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2

Immunofluorescent Staining of Cells and 3D Cultures

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For immunofluorescent stains, we rinsed the cells and 3D cultures twice with PBS (phosphate buffered saline). Cells were then fixed through a RT 15–30 min incubation in fresh 4% paraformaldehyde aqueous solution (157–4, ElectronMicroscopy Sciences) followed by rinsing twice with PBS. Cells were permeabilized through incubation in 0.1% Triton X-100 in PBST (phosphate buffered saline with 0.1% tween®20) for 15 minutes at RT. Cell on-specific binding was blocked through overnight incubation in 3% human serum albumin in PBST at 4 °C. After a 24-hours incubation with the primary antibody solutions at 4°C, the cells were washed five times. The following antibodies (and dilutions) were used: anti-p-tau antibody (1:40, AT8, Thermo Scientific, MN1020); anti-PHF (1:1000, A gift from P. Davies, Albert Einstein College of Medicine); anti-GFAP antibody (1:500, Neuromap, N206A/8), anti-MAP2 antibody (1:200, Cell Signaling Technology, 4542); anti-CD68 (1:100, Cell Signaling, 76437); anti-cd11b (1:100, Life Technologies, NB110–89474); anti-S100 (1:400, Abcam, ab868); anti-S100A6 (1:200, Cell Signaling, D3H3W); anti-S100B (1:500, Abcam, Ab218515); anti-ALDH1L1 (1:200, EMD Millipore, MABN495).
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3

Western Blot Analysis of Neural Biomarkers

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Protein lysates (15–75 μg) were resolved on 12% Bis-Tris or 4–12% gradient Bis/Tris gels (Life Technologies) and the proteins were transferred to nitrocellulose membranes (Bio-Rad). For amyloid-ß western blot analysis, the membranes were cross-linked with 0.5% glutaraldehyde solution before blocking. Western blot results were visualized using enhanced chemiluminescence (ECL). Signals were captured using ChemiDoc imaging system (Bio-Rad) and quantified using ImageJ software (NIH). The following primary antibodies were used (dilutions): anti- Aβ (1:100, 6e10; Signet); anti-Tuj1 (1:200, Abcam, ab24629); anti-MAP2 (1:200, Cell Signaling, 4542); anti-GFAP (1:100, Neuromap, N206A/8); anti-p-tau AT8 (1:30, Thermo Scientific, MN1020), p-tau PHF-1 (1:200, Abcam, ab66275), CD68 (1:200, BD Bioscience, 556059), CD11b (1:200, EMD Millipore, MM_NF-MABF515), anti-ALDH1L1 (1:200, EMD Millipore), Cy5 anti-mouse secondary antibody (1:400, Jackson Immunoresearch, 715-175-150).
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4

Immunofluorescent Staining of Cells and 3D Cultures

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For immunofluorescent stains, we rinsed the cells and 3D cultures twice with PBS (phosphate buffered saline). Cells were then fixed through a RT 15–30 min incubation in fresh 4% paraformaldehyde aqueous solution (157–4, ElectronMicroscopy Sciences) followed by rinsing twice with PBS. Cells were permeabilized through incubation in 0.1% Triton X-100 in PBST (phosphate buffered saline with 0.1% tween®20) for 15 minutes at RT. Cell on-specific binding was blocked through overnight incubation in 3% human serum albumin in PBST at 4 °C. After a 24-hours incubation with the primary antibody solutions at 4°C, the cells were washed five times. The following antibodies (and dilutions) were used: anti-p-tau antibody (1:40, AT8, Thermo Scientific, MN1020); anti-PHF (1:1000, A gift from P. Davies, Albert Einstein College of Medicine); anti-GFAP antibody (1:500, Neuromap, N206A/8), anti-MAP2 antibody (1:200, Cell Signaling Technology, 4542); anti-CD68 (1:100, Cell Signaling, 76437); anti-cd11b (1:100, Life Technologies, NB110–89474); anti-S100 (1:400, Abcam, ab868); anti-S100A6 (1:200, Cell Signaling, D3H3W); anti-S100B (1:500, Abcam, Ab218515); anti-ALDH1L1 (1:200, EMD Millipore, MABN495).
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5

Immunohistochemical Profiling of Alzheimer's Disease

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The following primary antibodies were used for this study: anti‐oligomeric Aβ OC rabbit polyclonal (1:5000, Millipore, Burlington, MA); anti‐GFAP (glial fibrillary acidic protein) rabbit polyclonal (1:10000, Dako, Troy, MI); anti‐GFAP chicken polyclonal (1:20000, Millipore); anti‐BLBP (brain lipid‐binding protein) rabbit polyclonal (1:2000, Abcam, Cambridge, MA); anti‐AQP4 (aquaporin 4) rabbit‐polyclonal (1:10000, Sigma, St. Louis, MO); anti‐ALDH1L1 (aldehyde dehydrogenase 1 family member L1; N103/39 clone) mouse monoclonal (1:2000, Millipore); anti‐EAAT2 (excitatory amino acid transporter 2) rabbit polyclonal (1:10000, Abcam); anti‐human APP rabbit polyclonal (1:10000, Sigma); anti‐Iba1 (ionized calcium binding adaptor molecule 1) rabbit polyclonal (1:1000, Wako, Mountain View, CA); anti‐VGluT1 (vesicular glutamate transporter 1) guinea‐pig polyclonal (1:10000, Millipore); anti‐synaptophysin rabbit polyclonal (1:1000, Abcam).
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6

Neuronal Differentiation and Characterization

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REST siRNA (siREST) (ID #: S11933), non-targeting, negative siRNA (siNEG) (Catalog #: AM4635) and nuclease-free water were purchased from Ambion. The transfection reagent, TransIT-TKO, was obtained from Mirusbio. Diethylpyrocarbonate treated Tris-EDTA buffer (DEPC-treated TE Buffer) was purchased from 1st Base, Singapore. M-MLV Reverse transcriptase (M3681) was purchased from Promega. iQ SYBR Green Supermix was purchased from Bio-Rad. 2, 2, 2-trifluoroethanol (TFE) was purchased from Acros Organics.
Polycaprolactone (PCL, Mw:70000-90000), 3,4-Dihydroxy-L-phenylalanine (DOPA), chloroform, 10% formalin, tris-buffered saline (TBS), Triton X-100, fluoromount, bovine serum, albumin (BSA) were purchased from Sigma-Aldrich. Fetal bovine serum (FBS) was obtained from Hyclone. Goat anti-nestin was purchased from Santa Cruz. Rabbit antimicrotubule associated protein-2 (MAP2), chicken anti-glial fibrillary acidic protein (GFAP), mouse anti-O4, anti-Olig2 and anti-ALDH1L1 were purchased from Millipore. Rabbit anti-βIII tubulin (Tuj1) was purchased from Covance. All other reagents were purchased from Life Technologies.
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