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37 protocols using d7200

1

Floral Phenology and Pollination of Ligularia oblata

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To determine the floral phenology, biology, and blooming process of L. oblata, flower buds of 5–10 randomly selected individuals were labeled and observed continuously until the flowers wilted for three consecutive years. The duration of pollen shed and changes of floral traits such as corolla morphology and stigma color were monitored and recorded. Additionally, 30 inflorescences in full blossom from 5 to 10 individuals were randomly selected, and the length of pedicel and flower, corolla length and diameter, floral tube length and width, and length of stigma and stamen were measured using a digital caliper (Pro’sKit PD-151).
The types and behaviors of flower visitors were monitored from 10:00 to 16:00 for seven consecutive sunny days in early May 2017 during peak flowering time. Flower visitors were recorded by photo and video (Nikon D7200) and captured with insect nets. The behavior and visiting frequency of flower visitors were recorded and compared. Tongue length and body width of captured insects were measured using a digital caliper, and compared with the floral tube length and width, respectively.
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2

Imaging and Quantifying Tissue Expansion in Brain Slices

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Transmission images of mouse brain slices were acquired with a stereomicroscope (M205C, Leica Microsystems) equipped with a 1× objective lens (PLANAPO, working distance [WD] = 65 mm, Leica Microsystems), a transmitted light base (TL RCI, Leica Microsystems), and a digital single lens reflex camera (D7200, Nikon). Marmoset brain slices were placed on a LED tracing board (A4-500, Trytec) and imaged with the digital single lens reflex camera mounted on a copy stand (CS-A4 L18142, LPL). Fluorescence images of the marmoset brains were acquired with the stereomicroscope equipped with an external fluorescence light source (EL6000, Leica Microsystems), a GFP filter cube (excitation filter: 470 ± 20 nm, emission filter: 525 ± 25 nm, Leica Microsystems), and a cooled CCD camera (Rolera-XR, QImaging). Brain samples were placed on graph paper with a patterned background (ruled into 1-mm squares).
To assess tissue expansion or shrinkage caused by tissue clearing, brain-slice areas were measured with ImageJ (ver. 1.52v, National Institutes of Health) (Schneider et al., 2012 (link)). Linear expansion values were determined based on the square root of the changes in the brain-slice areas.
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3

Comprehensive Characterization of SW-CPDs

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A JEOL JEM 2100 TEM was used to examine the morphologies of SW‐CPDs. AFM image was taken with MultiMode V SPM (VEECO). The XRD pattern was measured using Cu‐Kα radiation using a PANalytical X'Pert Pro MPD powder diffractometer. Optical absorption spectra were recorded on an UV‐2600 spectrophotometer. The PL spectra and time‐resolved PL decay data were obtained using a spectrometer (FLS980) from Edinburgh Instruments. The absolute overall QYs and phosphorescence QYs were obtained using an Edinburgh FLS980 FL spectrophotometer equipped with a xenon arc lamp (Xe900) and a microsecond flashlamp (µF900), and an integrating sphere, respectively. The photographs were taken with a camera (Nikon, D7200) under UV lamp illumination working at 365 nm (UV lamp: SPECTROLINE, ENF‐280C/FBE, 8 W). The FT‐IR spectrum was measured using a Nicolet 380 spectrograph. The XPS spectrum was measured with an ESCALab220i‐XL electron spectrometer from VG Scientific using 300 W Al Kα radiation. The Raman spectrum was measured using laser confocal Micro‐Raman spectroscopy (LabRAM Aramis). NMR spectra were recorded in Bruker DRX500.
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4

Muscle Fiber Diameter Quantification

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Samples from each group (n=10) were fixed in 10% phosphate-buffered formaldehyde solution. Following the process of decalcification and dehydration, the muscles were embedded in paraffin, cut into 5-µm sections and stained using hematoxylin and eosin. Muscle fibers (≥100 in each group) were observed in bright-field using Nikon ECLIPSE TS100 light microscope (Tokyo, Japan) and Nikon D7200 image acquisition system. Their diameters were measured using Image J software (National Institutes of Health, Bethesda, MD, USA).
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5

Cyanobacterial Growth Assay under CO2 Levels

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Indicated strains in fig. S1C were grown in six-well plates in ambient CO2 (WT, RbcL-GFP, ∆ccm+ with 1 mM IPTG) or elevated CO2 (∆ccm). Cells were diluted to 0.05 optical density at 730 nm (OD730 nm) and serially diluted three times. Seven microliters of each dilution was then spotted on 1% agar A+ plates (pH 8.2 in ambient CO2 and pH 11 in elevated CO2) and allowed to dry (5 to 10 min) before incubation at standard conditions noted above. When colonies appeared, spot plates were backlit on a Kaiser eVision light plate and imaged with a Nikon D7200 digital single-lens reflex camera.
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6

Measuring Petal Morphology and Cell Length

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A total of 45 petals were selected to measure their length as previously described (Li et al., 2015 (link)). Petals were imaged with a Nikon camera D7200 (Japan) and measured using ImageJ software. To measure the petal cell length and number, the top, middle and basal region of each petal were stained with propidium iodide (0.1 mg mL–1) for 5 min. Next, images of adaxial epidermal cells were captured using a confocal laser scanning microscope (LSM710, Carl Zeiss, Germany) and more than 50 cells were analyzed using ImageJ software. At least three biological replicates were used for each observation. The elongation rate was calculated according Han et al. (2017) (link).
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7

Morphological Analysis of Suaeda salsa

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The photographs showing the plant morphology of Suaeda salsa were taken at 10, 20, 40, 80,100 days after germination (DAG). The leaves and lateral stems of Suaeda salsa from 100 DAG were dissected and photographed using a Nikon D7200 digital camera. The flower buds at different developmental stages were picked up with a tweezer. The floral organs were dissected with 0.1 mm syringes under an anatomical microscope and then placed on agar plates (0.8%) for photographing. The images were taken through a Leica DFC550 microscope, and the measurements were performed using ImageJ software (NIH).
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8

Larval Swimming Behavior Observation

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To observe swimming behaviors, 2-day old larvae to 5-day old competent larvae were observed using a dissecting microscope. The light microscopy images and videos were acquired using an inverted compound microscope (OLYMPUS, IX 71) with a mounted camera (Nikon, D7200) examining animals in small petri dishes with coverslip bottom or mounted on slides in filtered ASW, sometimes adding 7% MgCl2 solution for further immobilization.
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9

In Vitro Angiogenesis Assay

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Matrigel (Corning, NY, USA) was thawed on ice overnight and diluted in DMEM at a ratio of 2:3. Each well of the 96-well plates was coated with 50 µl of diluted Matrigel and incubated at 37°C in 5% CO2 for 1 h. HUAECs were cultured in ECM supplemented with 0.2% FBS for 24 h before being used for tube formation. Cells were counted and resuspended to a final concentration of 7.5 × 106 cells/ml in DMEM supplemented with 10% FBS. The resuspended ECs were treated with vehicle, RGMa (2 µg/ml), VEGF (50 ng/ml), or VEGF plus RGMa. The cells were then seeded in 96-well plates coated with Matrigel and further incubated for 3–4 h in an incubator. Images were acquired with a microscope (magnification 40×) connected to a digital camera (D7200, Nikon, Tokyo, Japan). Photographs of 10 representative fields were used for quantification analysis using Image J. Three images were taken randomized from each group for analysis. The tube-formation assays were performed in triplicate using three sets of cells.
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10

Hydrogel Bilayer Curvature and Adhesion Characterization

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Bilayer strips were put into DI water at room temperature until reaching stable configurations. A camera (D7200, Nikon, Tokyo, Japan) was used to take photos of the hydrated hydrogels, and the curvature analysis was done using the digital imaging processing software Fiji and the plugin Kappa. Kappa measured the curvature of each point on the bilayer spline, then the average of the curvature was used to represent the curvature of each bilayer strip. For imaging the morphology and adhesion of the bilayer interface, bilayer strips were pre-frozen in liquid nitrogen for 5 min and then freeze-dried for 24 h. The samples were imaged by scanning electron microscopy (SEM; TESCAN RISE, TESCAN, Brno, Czech Republic) at Michigan Center for Materials Characterization (MC2) at the University of Michigan. To get the thickness input for the computational simulation, the bilayer strips were dried using ethanol with the method mentioned above. Then, the fully dehydrated bilayer strips were imaged with SEM to determine the thickness of PAAm hydrogel and PDMS. The input PDMS thickness was set as 300 μm , and the PAAm hydrogel thickness was normalized according to the actual PDMS thickness as: 74.5 μm (5 wt%), 77.9 μm (7 wt%), 87.7 μm (10 wt%), 96.4 μm (15 wt%), and 196.1 μm (20 wt%).
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