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Isotype matched controls

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Isotype-matched controls are laboratory reagents used in flow cytometry and other immunoassays to establish appropriate baseline measurements. They help distinguish specific antigen-antibody interactions from non-specific binding. Isotype-matched controls are designed to have the same isotype as the primary antibody but do not bind to the target antigen.

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5 protocols using isotype matched controls

1

Immunophenotyping of Murine Bone Marrow

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BM samples were collected from the femurs and tibias of mice and then lysed with erythrocyte lysing buffer. The remaining cells were first stained with Fixable Viability Stain 510 (FVS510; BD Bioscience). For blood cell lineage detection, the cells were stained with lineage antibodies against CD3e, CD11b, Ter-119, B220, Gr-1 and matched isotype controls (eBioscience). To examine the percentages of LSK (LinSca-1+c-Kit+) cells, BM cells were stained with biotin-labelled lineage antibodies and then incubated with streptavidin APC-eFluor® 780-labelled secondary antibody (eBioscience), along with BV605-labelled anti-mouse Sca-1 (BD Bioscience) and APC-labelled c-Kit (eBioscience). For the detection of engraftment and chimerism, the BM cells were stained with PE or FITC-labelled antibodies against CD45.1 or CD45.2 (eBioscience). All samples were detected by BD FACS Aria (BD Bioscience).
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2

Analysis of Hematopoietic Stem and Progenitor Cells

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BM cells were flushed from the femurs of mice with PBS containing 2% FBS. BM RBCs were lysed with lysing buffer (BD). For blood cell lineage detection, the cells were stained with lineage antibodies against CD3, CD11b, Ter-119, B220, Ly-6G and matched isotype controls (eBioscience). To examine the percentages of LSK cells, bone marrow cells were suspended in PBS and incubated with APC-Cy7-labeled lineage antibodies, PerCP-Cy5.5-conjugated anti-Sca-1 and APC-conjugated anti-c-Kit antibodies for 30 min. For the detection of engraftment and chimerism, the bone marrow cells were stained with PE or FITC-labeled antibodies against CD45.1 or CD45.2 (eBioscience). To monitor the proliferating hematopoietic cells, the mice were intraperitoneally injected with BrdU (100 mg/kg body weight) 12 h before sacrifice. The BrdU incorporation assay was performed using a cell proliferation assay kit (Sigma). Cell apoptosis was measured using a PI and Annexin-V staining kit according to the instructions of the manufacturer.
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3

Lymphocyte Surface Marker Phenotyping

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LBC-cell staining was performed as previously described (24 (link)). The following antibodies were employed: anti-mouse CD-24-PE, anti-CD8-PE MAbs, and isotype-matched controls (eBioscience, CA, USA). After incubation with anti-MHC I-Biotin primary antibody, the cells were washed and then incubated with streptavidin–phycoerythrin (PE) conjugated (eBioscience, CA, USA). Fluorescence was measured in a BD FACSCalibur flow cytometer (BD Biosciences, San Jose, CA, USA). The data were analyzed with the Flowing 2.5.1 software.
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4

Isolation and Analysis of Intrahepatic Immune Cells

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Mice were euthanized and the liver tissues were harvested, and then intrahepatic liver mononuclear cells were isolated as indicated previously[19 (link)]. Antibodies used for fluorescence-activated cell sorting (FACS) analysis were PerCP-Cy5.5 anti-cluster of differentiation 3 (CD3) (#35-0031-82), FITC anti-NK1.1 (#11-5941-82), PE anti-CD69 (#12-0691-82), PE anti-NKG2A (#12-5897-81), PE anti-NKG2D (#12-5882-82), or isotype-matched controls (eBioscience, San Diego, CA, United States). Cells were analyzed on a FACSCalibur flow cytometer, and then analyzed using WinMDI analysis software.
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5

Multicolor Flow Cytometry Analysis

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The following antibodies were used for immunostaining: FITC-DUSP6 (Bioss, Inc. Wobum, MA), APC-CD4/PE-IL-2 (eBioscience, San Diego, CA), PE-CD69/Percp-CD25 (Biolengend, San Diego, CA), and Alexa Fluor 488-Phospho-Akt (ser473) (193H12; Cell Signaling, Danvers, MA). Procedures for intracellular and cytokine staining were performed essentially as described previously [12 (link)–15 (link)]. The isotype-matched controls (eBioscience) were used to determine the level of background staining; Fluorescence minus one (FMO) strategy was used to determine background levels of staining and adjust multicolor compensation for cell gating. The cells were analyzed on an Accuri C6 flow cytometer (BD, Franklin Lakes, NJ) using FlowJo software (Tree Star, Inc., Ashland, OR).
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