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16 protocols using fv1000 confocal laser scanning biological microscope

1

Visualizing Mitochondrial-ER Interactions

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In situ proximity ligation assay was performed according to the instructions for the Duolink in situ PLA kit (Sigma-Aldrich). Anti-VDAC1, anti-IP3R1, or anti-GRP75 antibodies were used to visualize MAM formation. Fluorescent blobs were detected using a FV1000 confocal laser scanning biological microscope (Olympus, Tokyo, Japan) or an ImageXpress Micro Confocal Imaging System (Molecular Devices). The number of detected blobs per nucleus was calculated by ImageJ software or MetaMorph Microscopy Software (Molecular Devices).
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2

In vivo tracking of small extracellular vesicles

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For the in vivo tracking of sEVs, we isolated sEVs from the conditioned medium of young ADSCs and labeled them after the first ultracentrifuge with 5 μM PKH26 (Sigma-Aldrich, MINI26-1KT), after that, sEVs were resuspended in PBS and washed with another ultracentrifuge. Twenty micrograms of PKH26-labeled sEVs were injected in old mice (18 months), mice were euthanized 24 hours later, and kidney and gastrocnemius were obtained and fixed with 2% PFA for 24 hours. Forty-micrometer slices were mounted and stained with Hoechst (Invitrogen) 1:1000 for 30 min at RT. Coverslips were mounted with an aqueous mounting medium and sealed with nail polish. Images were acquired with Olympus FV1000 confocal laser scanning biological microscope. Images were processed in ImageJ, all levels were adjusted equally, and the ratios were not altered.
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3

Quantifying DNA Damage Using γ-H2AX Immunofluorescence

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The level of phosphorylated histone variant H2AX (γ‐H2AX), which is a surrogate marker of DNA damage is detected using immunofluorescence assay. In brief, CaSki‐RR and SiHa‐RR cells with FBXO6 overexpression alone or together with CD147 overexpression were plated onto culture slides (Corning Inc, Corning, NY, USA). When cells reached ~50% of confluence, cells were subjected to 17‐AAG (20 nM/24 h for CaSki‐RR and 50 nM/24 h for SiHa‐RR) or control pre‐treatment and then treated with 2 Gy irradiation. At 6 h later, the cells were fixed with buffered formaldehyde for 15 min and then permeabilized with 0.02% Triton. The cells were then blocked in 3% albumin in Dulbecco's phosphate‐buffered saline (DPBS) for 1 h. Then, the slides were incubated with a primary antibody against γ‐H2AX (AP0687, ABclonal, Wuhan, China) in a 1:200 dilution in the 3% albumin solution overnight at 4°C. Then, the slides were thoroughly washed and incubated with goat anti‐rabbit IgG (H&L) (Alexa Fluor 647) (ab150079, Abcam, Cambridge, UK) secondary antibody in a 1:500 concentration in albumin. The slides were kept in darkness for 1 h before washing. The slides were mounted using VECTASHIELD Antifade Mounting Medium with 4', 6‐diamidino‐2‐phenylindole (DAPI). Then, fluorescence images were captured using an FV1000 confocal laser scanning biological microscope (Olympus, Tokyo, Japan).
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4

Visualization of DNA Damage Response

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The formation of phosphorylated histone variant H2AX (p-γ-H2AX foci) was detected by immunofluorescent staining. A549 and Calu-3 cells were seeded onto culture slides (Corning Inc., Corning, NY, USA). When cells reached about 50% of confluence, cells were pretreated with ginsenoside Rg5 or DMSO for 24 h. Then, cells were subjected to 4 Gy irradiation. Four hours later, the cells were fixed and then permeabilized. The cells were then blocked and incubated with a primary antibody against p-γ-H2AX in a 1:500 dilution overnight at 4 °C. Then, the slides were thoroughly washed and incubated with Alexa Fluor 647-labeled goat anti-rabbit IgG (H+L) in a 1:500 concentration in albumin for 1 h in the dark. The slides were mounted using VECTASHIELD® antifade mounting medium with 4',6-diamidino-2-phenylindole (DAPI). Then, fluorescent images were captured using an FV1000 confocal laser scanning biological microscope (Olympus, Tokyo, Japan).
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5

Quantifying Mitochondrial Superoxide in HepG2 Cells

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MitoSOX was detected with the MitoSOX Red Mitochondrial Superoxide Indicator dye (Yeasen Biotechnology, 40778ES50). HepG2 cells were cultured in 6-well plates overnight and treated as described. For the determination of MitoSOX by flow cytometry, cells were gently collected and detected in accordance with the instructions of the FACSCalibur flow cytometry instrument (Becton Dickinson). The data are presented as a histogram of the mean intensity of MitoSOX fluorescence. For MitoSOX and Mito-EGFP imaging (Inovogen Biotechnology, VL3506), we stained MitoSOX in accordance with the instructions and acquired images using the FV1000 confocal laser scanning biological microscope (Olympus, Tokyo, Japan).
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6

Visualizing ER-EGFP Protein Localization

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BEAS-2B cells were plated in 8-well or 6-channel ibiTreat µ-slide chambers (ibidi GmbH, Martinsried, Germany), starved and treated with rEGFP or rDer p2-EGFP (5 µg/mL), and transduced with CellLight™ endoplasmic reticulum-red fluorescent protein (ER-RFP) (Invitrogen). Fluorescence in living cells was traced and recorded using an Olympus FV1000 confocal laser scanning biological microscope.
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7

Epithelial Origin Validation of MAC-T Cells

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The epithelial origin of MAC-T cells was tested by staining for cytokeratin 18. MAC-T cells (6 × 104 cells/well) were seeded into a 24-well culture plate with glass coverslips. After 24 h, cells were washed three times with phosphate-buffered saline (PBS) and fixed with 4% paraformaldehyde for 15 min on ice. The cells were then permeabilized with 0.2% (v/v) Triton X-100 (Sigma-Aldrich) and blocked with 1% bovine serum albumin. Subsequently, cells were incubated with mouse anti-cytokeratin-18 primary monoclonal antibody at a dilution of 1:200 (Ab668; Abcam, Cambridge, United Kingdom) for 45 min at 4°C, following by incubation with secondary antibody, goat anti-mouse fluorescein isothiocyanate (FITC)-conjugated IgG (F4143; Sigma-Aldrich). Cell nuclei were stained using 4′,6′-diamidino-2-phenylindole (DAPI; Sigma-Aldrich). Coverslips were imaged on an FV1000 confocal laser scanning biological microscope (Olympus, Tokyo, Japan).
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8

In-vivo Imaging of Liver Metastases

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Mice were injected with 2.5 µmol (94 µg) anti-CEA antibody conjugated to PEGylated DyLight 650. 48 hours later, the antibody-labeled HT-29 RFP liver metastases were harvested. The tumor was placed in OCT compound and subsequently dipped into liquid nitrogen. Once the tumor was frozen, it was placed on a microtome and sliced into 5 µm sections and placed on a glass slide and immediately dipped in 95% ethanol for fixation. Alternate slides were stained with H&E for fluorescence and brightfield imaging. Fluorescence and confocal imaging were done with the FV1000 Confocal Laser Scanning Biological Microscope (Olympus Corp. Tokyo, Japan) [24] (link).
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9

Immunofluorescent Staining of CD11b

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The sections were subjected to dewaxing and rehydration and then permeabilized with 0.1% Triton X-100 for 10 min. Then, the sections were blocked for 1 h with 10% horse serum. The sections were incubated overnight with a FITC-conjugated anti-mouse/human CD11b primary antibody (1:100, 101205; Biolegend, San Diego, USA) at 4°C. Then the nuclei were stained with DAPI which contained an anti-fluorescence quenching sealant (BL739A; Biosharp, Hefei, China). Finally, the slides were examined with a FV1000 confocal laser scanning biological microscope (Olympus, Tokyo, Japan).
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10

Mitochondria and Lysosome Imaging

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Cells were stained with MitoTracker Red and LysoTracker Green (Yeasen Biotech, 40738ES50) according to the manufacturer’s instructions, and then pictures were taken using the FV1000 confocal laser scanning biological microscope (Olympus, Tokyo, Japan).
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