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Rna pcr kit

Manufactured by Toyobo
Sourced in Japan

The RNA PCR Kit is a laboratory instrument used for the amplification and detection of ribonucleic acid (RNA) sequences. The kit provides the necessary components, including enzymes, buffers, and primers, to perform reverse transcription and polymerase chain reaction (RT-PCR) to amplify specific RNA targets.

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5 protocols using rna pcr kit

1

Quantifying Gene Expression in HeLa Cells

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After transfection, total RNA was extracted from HeLa cells using the RNAprep Pure Cell Kit (TIANGEN, China) and then reverse-transcribed into cDNA using the RNA PCR Kit (TOYOBO, Japan) according to the manufacturer's instructions. Real-time PCR was conducted using a ViiA7 DX Instrument (Life Technologies, USA). The reactions were completed in a total volume of 10 µl containing 5 µl of SYBR Green Real-Time PCR Master Mix (TOYOBO, Japan), 2 µl of ddH2O, 1 µl of cDNA, and 1 µl of each primer. PCR amplification was performed using the following conditions: 10 s at 95°C and 45 cycles of 15 s at 95°C and 60 s at 60°C. The relative mRNA expression level was analyzed using the 2−ΔΔCT calculation method. The glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA expression level was used as an endogenous control. The forward primers and reverse primers were obtained from Sangon Biotech (Shanghai, China), and their respective sequences were as follows: ARHGEF10L: 5′AGTGCCAGGTGGTGTTCTTC3′ and 5′AAGAGGTCCCCGATCTTCTC3'; GAPDH: 5′CAGAACATCATCCCTGCCTCTAC3′ and 5′TTGAAGTCAGAGGAG ACCACCTG3'; HSPA6: 5′ ACTTTCACCACCTACTCGGA 3′ and 5′ CCCTCTCA CCCTCATACAC3'. All experiments were repeated at least three times.
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2

RNA Extraction and qRT-PCR Protocol

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Total RNA of tissues or cells was extracted using Trizol reagent (Life Technologies, USA). The extracted RNA was reverse-transcribed into first-strand cDNA in a final volume of 10 µL using an RNA PCR Kit (Toyobo, Japan). The reverse-transcribed first-strand cDNA was used as the template for real-time PCR with the forward primer and the reverse primer. The conditions of real-time PCR were as follows: 10 s at 95 °C; 45 cycles of 5 s at 60 °C and 10 s at 72 °C; and 30 s at 65 °C. This experiment was performed in triplicate. Real-time PCR was performed using a 10 µL total volume that contained 1 µL of cDNA, 2 µL of ddH2O, 5 µL of SYBR Green Real-time PCR Master Mix (Toyobo, Japan), 1 µL of forward primer and 1 µL of reverse primer. GAPDH was used for quantity and quality control using the forward primer of human GAPDH-QF and the reverse primer of human GAPDH-QR. The primer sequences in detail used in this study are shown in Additional file 1: Table S1. Data were analyzed using the formula R = 2−[ΔCt sample − ΔCt control], where R is the relative expression level, ΔCt sample is the difference between the Ct of the gene and the average GAPDH in the experiment sample, and ΔCt control is the difference between the Ct of the gene and the average GAPDH in the control sample.
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3

Quantifying Gene Expression in RASF

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Total RNA was extracted from cultured RASF using TRIzol reagent (Sigma, USA) according to the manufacturer’s protocol. cDNA was synthesized using an RNA PCR kit (Toyobo, Japan). Real-time PCR was conducted using a ViiA7Dx instrument (ABI, USA) according to the manufacturer’s instructions. The relative expression levels of the target genes were normalized to the relative GAPDH mRNA levels. The experiment was performed in triplicate, and the PCR products were verified using melting curve analysis. The relative mRNA expression level was calculated using the Ct method with the following formula: 2–ΔΔCt = 2–ΔCt (target gene) – ΔCt (GAPDH). The mRNA expression of the target genes was quantified with fold change by comparison with the GAPDH expression level. Shenggong (Shanghai, China) designed and provided the commercial primers. The primers designed for the targeted genes are shown in Table 1.
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4

Quantification of PADI3 gene expression

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The total RNA of cells or tissues was extracted using Trizol reagent (Life Technologies, USA). The extracted RNA was reverse-transcribed into first-strand cDNA in a final volume of 10 μL using an RNA PCR Kit (Toyobo, Japan). The reverse-transcribed first-strand cDNA was used as the template for real-time PCR with the forward primer PADI3-QF and the reverse primer PADI3-QR; the primer sequences are shown in Supplementary Table S1. The conditions of real-time PCR were as follows: 10 s at 95°C; 45 cycles of 5 s at 60°C and 10 s at 72°C; and 30 s at 65°C. This experiment was performed in triplicate. Real-time PCR was performed using a 10 μL total volume that contained 1 μL of cDNA, 2 μL of ddH2O, 5 μL of SYBR Green Real-time PCR Master Mix (Toyobo, Japan), 1 μL of forward primer and 1 μL of reverse primer. GAPDH was used for quantity and quality control using the forward primer of human GAPDH-QF and the reverse primer of human GAPDH-QR. The primer sequences are shown in Supplementary Table S1. Data were analyzed using the formula R = 2−[ΔCt sample − ΔCt control], where R is the relative expression level, ΔCt sample is the difference between the Ct of the gene and the average GAPDH in the experiment sample, and ΔCt control is the difference between the Ct of the gene and the average GAPDH in the control sample.
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5

Quantifying Gene Expression Changes

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Total RNA was extracted from the transfected cells using the RNAprep Pure Cell Kit (TIANGEN, China) and then reverse-transcribed using the RNA PCR Kit (TOYOBO, Japan). QRT-PCR was conducted using a ViiA7 DX Instrument (Life Technologies, USA) according to the manufacturer's protocol. Relative mRNA expression was calculated using the comparative threshold cycle (Ct) method, and the relative target gene expression level was normalized to the glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA expression level. Respective forward and reverse primer sequences were as follows: ARHGEF10L: 5ʹ-AGTGCCAGGTGGTGT TCTTC-3ʹ and 5ʹ-AAGAGGTCCCCGATCTTCTC-3ʹ; GAPDH: 5ʹ-CAGAACATCATCCCTGCCTCTAC-3ʹ and 5ʹ-TTGAAGTCAGAGGAGACCACCTG-3ʹ; HSP A6: 5ʹ-ACTTTCACCACCTACTCGGA-3ʹ and 5ʹ-CCC TCTCACCCTCATACAC-3ʹ. All experiments were performed in triplicate. Forty-eight hours after the transfection, qRT-PCR was used to detect the RNA level.
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