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21 protocols using pro il 1β

1

Protein Extraction and Western Blotting

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For protein extraction, the cells were sonicated on ice in RIPA Buffer (Biosesang, Seongnam, Korea) containing a protease inhibitor cocktail. After centrifugation at 12,000 rpm at 4°C for 20 min, clear cell lysates were measured for protein concentration by Bradford assay. A total of 20 μg protein was fractionated by SDS-PAGE on 8–16% Tris- glycine gel (Komabiotech, Seoul, Korea), transferred to nitrocellulose membrane (Invitrogen), and then blotted with antibodies against LC3 II (1:500), p62/SQSTM1 (1:4000), beclin 1 (1:10000), ATG5 (1:500), Nrf2 (1:1000) (Novus biological, Littleton, USA), pro-IL-1β (1:1000), p38 (1:1000), phospho-p38 (pp38, 1:1000) (Cell Signaling Technology, Danvers, MA), or β–actin (1:200, Santa Cruz Biotechnology).
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2

Liver Protein Extraction and Western Blotting

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Proteins were extracted from liver tissue or cells with ice‐cold lysis buffer (50 mm Tris, 150 mm NaCl, 0.1% sodium dodecyl sulfate, 1% sodium deoxycholate, 1% Triton X‐100). Proteins (20 μg/sample) were subjected to 10% sodium dodecyl sulfate‐polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride nitrocellulose membranes (Bio‐Rad, Hercules, CA, USA). Monoclonal antirabbit NLRP3, cleaved caspase‐1, procaspase‐1, ASC, IL‐1β, pro‐IL‐1β, phospho‐AMPK, AMPK, phospho‐mTOR, mTOR, p62, LC3B, Bcl‐2, Bcl‐xL and β‐actin antibodies (Cell Signaling Technology) were used.
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3

Protein Extraction and Western Blot Analysis

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We used the Whole Protein Extraction Kit (KeyGEN BioTECH) to extract total protein from tissues and cells. Additionally, we used the Nuclear and Cytoplasmic Protein Extraction Kit (KeyGEN BioTECH) to extract nuclear and cytoplasmic proteins from KCs based on the manufacturer’s protocols. All protein lysates were separated by standard SDS-PAGE and then transferred onto polyvinylidene fluoride (PVDF) membranes. The antibodies used were as follows: Nrf2 (Abcam), Bcl2, Bcl-xL, NLRP3, cleaved caspase-1, pro-caspase-1, ASC, IL-1β, pro-IL-1β, LC3B, p62, HO-1, β-actin, and horseradish peroxidase (HRP)-conjugated anti-rabbit IgG antibodies (Cell Signaling Technology).
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4

Purification and Characterization of Gp96 Protein

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Gp96 was purified from mouse livers and verified by SDS-PAGE and immunoblotting (2 (link)). Endotoxin contamination is determined to be below the detection limit of the Limulus Amebocyte Lysate (LAL) (2 (link)). One ng LPS (SIGMA) is equivalent to 5 EU (LAL assay) or 10 EU (Chromogenic assay). Where indicated, PECs were treated with 10 μM Nigericin (TOCRIS), 10 μM of the NF-κB inhibitor, Cardamonin (SIGMA), 15 μM of the p38 MAPK inhibitor, SB203580 (Calbiochem), 20 μg/mL of the caspase-1 inhibitor, YvAD (Calbiochem), 2mM of the ROS scavenger, N-acetylcystine (MP biomedicals) or 25 μM of the P2X7 inhibitor A438079 (TOCRIS). N-acetylcystine and A438079 were verified to block IL-1β production by PECs treated with LPS + ATP (data not shown). Treatments started 30 mins prior, and lasted for the duration of the experiment. Cell lysates were analyzed by SDS-PAGE and immunoblotting with primary and HRP-conjugated secondary antibodies. Primary antibodies to Pro-IL-1β, NLRP3, ASC, β-Actin were from Cell Signaling Technology, and to caspase-1 (p20) from Adipogen. The FLICA assay was performed using FAM FLICA™ caspase-1 kit (BIO-RAD). The APC Annexin V apoptosis detection kit (BioLegend) was used for the cell death experiments.
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5

Evaluating the Anti-Inflammatory Effects of HSYA

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HSYA [>98% high-performance liquid chromatography (HPLC) purity] was purchased from Tauto Biotech (Shanghai, China). LPS (Escherichia coli O55:B5) was purchased from Sigma-Aldrich Chemical (St. Louis, MO, USA). Fetal bovine serum (FBS), Dulbecco's modified Eagle medium (DMEM), antibiotic-antimycotic, and TRIzol® reagents were purchased from Gibco (Grand Island, NY, USA). Bicinchoninic acid (BCA) protein assay kit was purchased from Pierce (Rockford, IL, USA). Enzyme-linked immunosorbent assay (ELISA) kits for mouse IL-1β and IL-18 were purchased from Cusabio (Wuhan, China). Antibodies for mouse β-actin, GAPDH, pro-IL-1β, IL-1β, NLRP3, ASC, procaspase-1, and caspase-1 were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibody for XO was purchased from Santa Cruz (Dallas, TX, USA). The goat anti-mouse antibody was purchased from LI-COR Odyssey® (Lincoln, NE, USA). Probe DCFH2DA was purchased from Invitrogen (Carlsbad, CA, USA). XO activity assay kit (C/F) was purchased from BioVision (Milpitas, CA, USA). XO active protein was purchased from Abcam (Cambridge, MA, USA).
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6

Quantification of TAM Receptors and Cytokines

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Human FM explants were homogenized and proteins extracted and quantified as previously described (8 (link), 35 (link)). TYRO3, AXL, and MERTK levels were evaluated by Western blot as previously described (8 (link)) using the anti-human primary antibodies against TYRO3 (#MAB859, R&D Systems), AXL (#AF154, R&D Systems), and MERTK (#AF891, R&D Systems). IL-1β levels were evaluated using the anti-human primary antibodies against pro-IL-1β (# 12703, Cell Signaling) and the active form (# 2022, Cell Signaling). β-Actin was used as a loading control (Sigma). Images were recorded and semi-quantitative densitometry performed using the Gel Logic 100 system and Carestream software (Carestream Molecular Imaging, Woodbridge, CT). ELISA was used to measure the tissue levels of GAS6 (R&D Systems) and total PROS1 (Innovative Research Inc., Novi, MI).
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7

Western Blot Analysis of Gut Tissues

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Standard Western blot analysis was performed on the duodenum, jejunum, and ileum tissues of birds. Briefly, tissues were homogenized with protein lysis buffer. Protein concentration was determined using the BCA protein assay kit (Thermo Fisher Scientific) as per the manufacturer's instructions and using a multimode microplate reader for spectroscopic measurements. About 30 μg proteins were mixed with 3 μL loading buffer and subjected to 10% SDS-PAGE electrophoresis followed by blotting onto a polyvinylidene difluoride membrane. Membranes were immersed in blocking solution (3% BSA in tris buffered saline tween) for 2 h and then immunoblotted with primary antibodies (Hsp70, TLR4, NF-κBp65, caspase-1, pro-IL-1β, IL-1β, IL-6, TNF-α, and β-actin; Cell Signaling Technology, Danvers, MA) diluted with 3% BSA for 2 h at room temperature. The membranes were washed with tris buffered saline tween buffer 3 times followed by 1 h incubation with HRP-conjugated secondary anti-mouse IgG from goat (or anti-rabbit IgG). And the gray level of the protein expression was analyzed by using the software, ImageJ.
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8

Western Blot Analysis of Inflammatory Signaling

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WBs were performed
as described previously.60 (link) Tissue homogenates
and cells were prepared in lysis buffer (Beyotime, Shanghai, China),
consisting of 1 nM phenylmethanesulfonyl fluoride (Beyotime, Shanghai,
China) to extract protein, and the protein concentration was detected
using an BCA protein detection kit. An equal amount of protein solubilization
was added to the band and separated by 10% sodium dodecyl sulfate
polyacrylamide gel. Then the isolated protein was transferred to a
polyvinylidene fluoride membrane (Millipore Corporation, Darmstadt,
GER). After incubation in 5% skimmed milk containing 0.1% TBST for
1 h, the membrane was incubated with primary antibodies against mouse
PI3K(A1520, Santa Cruz Biotechnology, CA, USA), phospho-PI3K(D1718,
Santa Cruz Biotechnology, CA, USA), p38(C0218, Santa Cruz Biotechnology,
CA, USA), and phospho-p38 antibody (I1719, Santa Cruz Biotechnology,
CA, USA), NLRP3(A27381510, Adipogen, Liestal, SUI), NF-κB p65(#F2912,
Santa Cruz Biotechnology, California, USA), p-NF-κB p65 (16,
Cell Signaling Technology, Boston, MA, USA), and Pro-IL-1β (#12242,
Cell Signaling Technology, Boston, MA, USA) or GAPDH (BC004109, Proteintech,
PA, USA) in 1:1000 dilution overnight at 4 °C. Then, the secondary
antibodies were added, and the membrane was incubated at room temperature
for 1 h. In each sample, the target protein expression level was normalized
to GAPDH.
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9

Western Blot Analysis of NLRP3 Inflammasome

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Protein samples obtained from BMDM cells were separated by SDS-PAGE and transferred to PVDF membranes (Merck Millipore, Burlington, MA, USA). These membranes were blocked with 5% skim milk and incubated overnight with primary antibodies against LPA5 (1:1000, LifeSpan BioScience, Seattle, WA, USA), NLRP3 (1:1000), procaspase 1 (1:1000, Abcam), caspase-1 (1:1000, AdipoGen Life Sciences), pro IL-1β (1:1000, Cell Signaling Technology, Danvers, MA, USA), mature IL-1β (1:1000, Abcam), and β-actin (1:10,000, Bethyl Laboratories, Montgomery, TX, USA) followed by incubation with HRP-conjugated secondary antibodies (1:10,000, Santa Cruz Biotechnology, Dallas, TX, USA). Protein bands were visualized using an enhanced chemiluminescence detection kit (Donginbiotech Co., Seoul, South Korea). Image J software was used to quantify target protein bands.
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10

Quantitative Western Blot Analysis of Macrophage Proteins

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Macrophages stimulated as described above were lysed by lysis buffer. The concentration of protein was determined by the BCA Protein Assay Kit (ZJ102, Epizyme Biotech, Shanghai, China). Appropriate gels (7.5%, 10%, 12.5%, PG211, PG212, PG213, Epizyme Biotech, Shanghai, China) were used in this experiment. After electrophoresis, proteins were transferred to PVDF membranes (Millipore, Burlington, MA, USA) and incubated in 5% skim milk at room temperature for 1 h. PVDF membranes were then incubated in primary antibody against GSDMD (#39754), N-GSDMD (#39754), pro-IL-1β (#12242), p-mTOR (#5536), phospho-ULK1 (Ser757) (#14202), p-S6 (#4858), p-4EBP1 (#2855), mTOR (#2983), Raptor (#2280), LC3B (#58139), p62 (#5114), and β-actin (#4970) (1:1000, all from Cell Signaling Technology, Danvers, MA, USA) at 4 °C overnight. After being washed with TBST 3 times, membranes were incubated with corresponding secondary antibodies (1:5000, ab6721, Abcam, Cambridge, UK) for 2 h. The ECL kit (SQ201, Epizyme Biotech, Shanghai, China) was used to detect the protein in the membrane and ImageJ software (Version 1.54b) was used for protein quantification. Three replicates were used in Western blot.
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