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4 protocols using anti prb 4h1

1

Immunodetection of HPV16 Proteins

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Anti-HPV16E6 antibodies 1E-6F4 (E6 N-ter) and 2E-3F8 (E6 C-ter) were obtained from Euromedex. Anti-p53 (DO-1) and anti-pRb (4H1) antibodies were obtained from Cell Signaling. Anti-β-actin (AC-15) antibody was obtained from Sigma-Aldrich. Anti-HPV16E7 (NM2) antibody was obtained from Santa Cruz Biotechnology. HRP-conjugated goat anti-mouse secondary antibody was purchased from BD Pharmingen. Primary and secondary antibodies have been diluted respectively to 1:1000 and 1:5000 in blocking buffer (except for β-actin at 1:20,000 and 1:30,000).
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2

Comprehensive Immunoblotting Analysis of EBV Proteins

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The following antibodies were used: anti-DOK1 (ab8112, Abcam), anti-E2F1 (KH-95; Santa Cruz Biotechnology), anti- β-Actin C4 (MP Biomedicals), anti-LMP1 (S12), anti- phosphor IκBα (#9246, Cell Signaling Technology), anti-total IκBα (#9242, Cell Signaling Technology), mouse IgG, rabbit IgG (Santa Cruz Biotechnology), anti-p65 (#3034, Cell Signaling Technology), anti-H3K4me3, and anti-H3K27me3 (Epigentek), anti-EZH2 (AC22; Cell Signaling Technology), anti-pRB (4H1, Cell Signaling Technology), anti-DNMT1 (60B1220, Abnova), anti-EBNA1 (1EB12, Santa Cruz Biotechnology), anti-EBNA2 (Novocastra), anti-EBNA3A (Exalpha), anti-EBNA3C (ab16128, Abcam). Immunoblotting was performed as described previously [29] (link).
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3

Protein Extraction and Western Blot Analysis

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The total cell extract was prepared from the recovered cells by incubation in RIPA buffer (20 mM Tris-HCl (pH 8.0), 150 mM NaCl, 5 mM MgCl2, 1 mM EDTA, 1 mM dithiothreitol, 1% Nonidet P-40, and complete protease inhibitor cocktail (Roche Diagnostic)) at 4°C for 10 min, followed by centrifugation at 21,000× g at 4 °C for 10 min. Proteins in the extract were separated on a 4–15% polyacrylamide gel using SDS-PAGE, transferred to a PVDF membrane, and detected by the ECL prime western blotting detection reagent (GE Healthcare, Chicago, IL, USA) with the following antibodies: anti-FLAG (M2; Sigma-Aldrich), anti-pRb (4H1; Cell Signaling Technology, Danvers, MA), anti-PTPN14 (D5T6Y; Cell Signaling Technology), and anti-α-tubulin (B-5-1-2; Sigma-Aldrich). The band intensity of each protein was quantified with ChemiDoc XRS+ with Image Lab software (Bio-Rad, Hercules, CA, USA).
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4

Western Blot Analysis of Protein Samples

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Monolayer cells were washed with 1× phosphate-buffered saline (PBS), harvested in 1.25× Laemmli buffer (78 mM Tris, pH 6.8; 2.5% SDS; 6.25% glycerol; 0.125% bromophenol blue; 2.5% β-mercaptoethanol), and immediately incubated at 99°C for 5 min and then placed on ice. Samples were treated with 100 U/ml Benzonase (Millipore) for 5 min at room temperature, and protein concentration was determined with a NanoDrop spectrophotometer (Thermo Fisher Scientific). Either 30 or 50 µg protein (as indicated in the figure legends) per lane was applied for Western blotting with the following antibodies: anti-FLAG M2 (Sigma-Aldrich catalog number F3165), anti-Strep-tag (IBA catalog number 2-1509-001), anti-p53 DO-1 (Santa Cruz Biotechnology catalog number sc-126), anti-pRb 4H1 (Cell Signaling Technology catalog number 9309), anti-HPV16 E7, clone NM2 (gift from Martin Müller, DKFZ), anti-HPV16 E6 (Euromedex catalog number E6-6F4), anti-kynureninase E-5 (Santa Cruz Biotechnology catalog number sc-390360), anti-CPPED1 H-11 (Santa Cruz Biotechnology catalog number sc-514222), anti-l-Plastin B-9 (Santa Cruz Biotechnology catalog number sc-133218), anti-transgelin 6G6 (Santa Cruz Biotechnology catalog number sc-53932), and goat-anti mouse IgG (H+L) horseradish peroxidase (HRP; Jackson ImmunoResearch).
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