The largest database of trusted experimental protocols

13 protocols using facslyrictm

1

Evaluating Flow Cytometer Stability

Check if the same lab product or an alternative is used in the 5 most similar protocols
The BD CS&T Research Beads (catalog number 349523) were used for measurements of the supported BD digital flow cytometer (BD FACSLyricTM), and a histogram was generated and analyzed. The MFI of the beads at 0 h (FL1) was recorded. After performing the experiment continuously for 8 h, the experiment was repeated under the same parameter settings, and the MFI of standard particles (FL2) was calculated. When the ambient temperature does not exceed 5% of the setting temperature, the fluctuation range of the FSC and the peak fluorescence from all fluorescent channels should not exceed 10% within 8 h of starting up. Bias=FL1FL2FL1×100% where (FL1)is the MFI immediately after starting up and FL2 is the MFI 8 h after starting up.
+ Open protocol
+ Expand
2

Fractionation and Characterization of Adipose Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Stromovascular cells (SVC) and adipocytes from gonadal white adipose tissue (gWAT) were fractionated, as previously described (Lee et al., 2012 (link); Lee et al., 2017 (link); Cho et al., 2019 (link)). Live cells were processed for cell surface marker staining. Antibodies used for flow cytometry analysis were the following: anti-F4/80-APC and CD11c-BV421 (Biolegends). Anti-F4/80-FITC (Biolegends), anti-Cx43 (rabbit, 1:100, Cell Signaling), and goat anti-Rabbit IgG (H+L) secondary antibody Alexa FluorTM 594 (rabbit, 1:100, Invitrogen). Analytic cytometry was performed using BD FACSLyricTM (BD Biosciences) flow cytometers. Raw data were processed using FlowJo software (Tree Star). For the identification of cell types in flow cytometry data, at least 10,000 cells were analyzed per sample.
For macrophage isolation, dissociated adipose tissue was fractionated by magnetic cell sorting (MACS) with Anti-F4/80-FITC/anti-FITC-microbeads (Miltenyi Biotech).
+ Open protocol
+ Expand
3

Multicolor Flow Cytometry Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were incubated with 7AAD or fixable viability dye 700 and with FcR Blocking Reagent (all BD biosciences, Franklin Laker, NJ, USA) followed by the staining with various fluorescence-labeled antibodies (Table S1). For intracellular staining, cells were fixed and permeabilized with the eBioscienceTM Foxp3/Transcription Factor Staining Buffer Set (Thermo Fisher Scientific, Waltham, MA, USA) according to the manufacturer’s instructions. To measure NO and ROS production, we used hROS Detection Kit (Cell Technology Inc., Minneapolis, MN, USA) and diaminofluorescein-FM diacetate (DAF-FM DA, Cayman Chemical, Ann Arbor, MI, USA) respectively. Acquisition was performed by ten-color flow cytometry by BD FACSLyricTM with FACSuiteTM software (BD Biosciences, Franklin Laker, NJ, USA). The results were analyzed by FlowJoTM V10 software (BD Biosciences, Franklin Laker, NJ, USA). Up to fluorescence minus four controls were used to define the gating strategy. For CD73 and PD-L1 staining, isotype controls were used (Table S2).
+ Open protocol
+ Expand
4

Evaluating Novel 10-Color Flow Cytometer

Check if the same lab product or an alternative is used in the 5 most similar protocols
This section describes the methods used for obtaining the performance characteristics of the novel 10‐color flow cytometer (BD FACSLyricTM).
+ Open protocol
+ Expand
5

Single-cell Isolation and Characterization of Hair Bulge Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Single-cell suspensions were prepared from vibrissa hair bulge from the back skin
of experimental mice, according to a previously established method (Takeo et al., 2021 (link)). Cells were then
resuspended in PBS containing 0.5% BSA, and stained with FITC anti-mouse CD34
antibody (Thermo Fisher Scientific) and PE anti-mouse CD49f antibody (Thermo
Fisher Scientific) for 15 min at 4°C. After staining, cells were analyzed
by flow cytometry using BD FACSLyricTM (BD Biosciences, Mountain
View, CA, USA) with BD FlowJoTM software (BD Biosciences).
+ Open protocol
+ Expand
6

Optimal Conditions for Flow Cytometer

Check if the same lab product or an alternative is used in the 5 most similar protocols
The 10‐color flow cytometer (BD FACSLyricTM) was placed in an environment with room temperature (20°C), humidity between 40% and 70%, a power supply voltage of 220 ± 22 V and 50 ± 1 Hz and standard atmospheric pressure. Direct exposure to sunlight and other heat sources was eliminated.
+ Open protocol
+ Expand
7

PBMC Isolation and Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Peripheral blood mononuclear cells (PBMCs) were isolated from peripheral blood by density gradient centrifugation with Biocoll cell separation solution (Biochrom AG, Berlin, Germany) and frozen in FCS + 10% DMSO. For analysis, PBMCs were thawed and washed twice with PBS. One million cells were stained with smCD3-APC-H7 (clone SK7, BD), CD19-PC7 (clone J3-119, Beckman Coulter), CD20-V450 (clone 2H7, BioLegend), CD27-BV605 (clone L128, BD) and CD38-APC-R700 (clone HIT2, BD for 30 min at room temperature. Flow cytometry was performed on a BD FACSLyricTM and data was analyzed using FlowJo software (version 10).
+ Open protocol
+ Expand
8

Analyzing Apoptosis in Glioma Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
U251/TR cells and A-172/TR cells were seeded into 6-well plates for different treatment (knockdown of ZNF300 through transfecting with sh-ZNF300). 1×10 5 of U251/TR cells and A-172/TR cells were firstly collected into 1.5 ml EP tubes and then incubated with propidium iodide (PI) and FITC-conjugated Annexin V for 15 min and finally assessed by flow cytometry analysis (BD FACSLyric TM , California, USA).
+ Open protocol
+ Expand
9

Characterizing PB Immune Cells by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
PB immune cells were identified and characterized by flow cytometry, using a stain–lyse–wash procedure previously described [20 (link),21 (link),22 (link)]. In summary, 100 µL of PB was incubated with the monoclonal antibodies (mAbs) indicated in Table 4, in the presence of 50 µL of Brilliant stain buffer (Becton Dickinson Biosciences (BD), San Jose, CA, USA), for 30 min in the dark and at room temperature. Subsequently, erythrocytes were lysed using 2 mL of FACSLysing solution (BD) and a 10 min incubation period. After centrifugation at 540× g for 5 min, the FACSLysing solution was discarded, and the resulting cell pellet was washed with 2 mL of Dulbecco’s phosphate-buffered saline (DPBS; Corning, Manassa, VA, USA). Lastly, the cell pellet was resuspended in 500 µL of DPBS, and the sample was acquired in a FACSLyricTM (BD) flow cytometer, using the FACSuite acquisition software (v1.5.0.925; BD).
+ Open protocol
+ Expand
10

Flow Cytometry Sample Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Single cell suspensions were stained with a cocktail of antibodies using a PBS buffer containing 3% (mouse) or 10% (human) FCS and 1 mM EDTA (see Supplementary Tables 2, 3 for a complete list of Abs recognizing mouse and human antigens) following standard techniques, and analyzed on LSRIITM, FACSVerseTM, FACSLyricTM, or LSRFortessaTM X-20 (all BD Biosciences) flow cytometers. Data were analyzed using FlowJo software version 10 (Treestar Inc.).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!