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5 protocols using calcein am

1

Assessing Slice Viability through Fluorescence Imaging

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Slice health was assessed by calcein/ethidium homodimer staining at 4, 7, 14, and 21 days and, in the case of one sample subset, at 40 days (ethidium homodimer (Sigma-Aldrich, Gilligham, UK) and calcein-AM (VWR, Poole, Leicestershire, UK). Slice cytoarchitecture and LIVE/DEAD proportions were assessed from fluorescence micrographs. Utilizing a previously reported technique (Weightman et al., 2014), the estimation of slice viability was based on comparative integrated density values of calcein (live cells) versus ethidium homodimer (dead cells). For detailed information, see Additional file 1.
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2

Tau Aggregation Inhibition Assay

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Epoxomicin, MG132, and lactacystin were purchased from Cayman Chemical. SP600125 was purchased from Cell Signaling. Trehalose was purchased from Calbiochem. Bafilomycin A1 was purchased from LC Laboratories. Resazurin and Calcein-AM were purchased from VWR. The polyclonal tau antibody was purchased from Dako. 12E8 (pSer262) was a gift from P. Seubert (Prothena, Inc) and PHF-1 (pSer396/404) was a gift from P. Davies (The Feinstein Institute for Medical Research). The other antibodies used in the study were AT-180 (pThr231, Pierce), anti-LC3B (Cell Signaling), anti-HSPB8 (Cell Signaling), anti-BAG3 (Proteintech), anti-β-actin (Millipore), and anti-α-tubulin (Pierce Biotechnology).
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3

Measuring Mitochondrial ATP Production

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Mitochondrial-specific ATP was assessed after permeabilizing the cell membranes (Zoeteweij 1994 (link)) (supplementary Fig. 2F). After the desired exposure period Hanks’ buffer (Thermo Fisher 14175053) was supplemented with 5 mM HEPES, 250 mM sucrose (Thermo fisher s8600/63), 25 mM TRIS, 3 mM EGTA (Sigma-Aldrich 4378), 5 mM MgCl2 (Sigma-Aldrich 8266), 5 mM succinate (Sigma-Aldrich S2378) and 5 mM glutamate (Sigma-Aldrich G5889) (37 °C, pH 7.3). 150 µM digitonin (Sigma-Aldrich D5628) was added to permeabilize the cell membranes. After 30–45 s exposure, the buffer was replaced by PBS and the ATPlite 1step Luminescence Assay was performed as described above. The membrane permeabilization protocol was validated using confocal imaging. For this, cells were co-stained with Hoechst and 0.5 µM Rho123 and/or 0.05 µM Calcein–AM (VWR, 734–1434), to assess mitochondrial integrity (digitonin exposure should not affect the Rho123 intensity; Suppl. Figure 1F and G) and loss of cell membrane integrity (digitonin exposure should result in the loss of Calcein-AM signal; Suppl. Figure 1F, H and I). The Hoechst (408 nm) and Rho123/Calcein-AM (488 nm) signal intensity was monitored live every 10 s just before and after addition of digitonin using a 20 × objective on a Nikon TiE2000 with perfect focus system, automated-stage, and controlled temp/CO2 incubator (Nikon, Amsterdam, The Netherlands).
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4

Fluorescence-based Migration and Invasion Assays

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For migration assays, 6x104 H23/C18 cells were seeded in the upper chamber of a non-coated FluoroBlok 12 mm insert (Corning; #62406-504). Inserts coated with Matrigel (Corning; #354234) were used for invasion assays. After incubation at 37°C for 48 hrs in the presence or absence of Dox, cells were stained with 4 μg/ml Calcein-AM (VWR, Radnor, PA; #89044-502) for 1 h and fluorescence was measured from the bottom of the plates using the CytoFluor4000 fluorescence plate-reader (Applied Biosystems) at wavelengths of 490/520 (Ex/Em).
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5

Characterization of PEGylated Gold Nanorods

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Chloroauric acid (HAuCl 4 ) was purchased from Sigma Aldrich. The cell counting Kit-8 (cat #CK04-20) was purchased from Tebu-bio, Offenbach, Germany. PEGylated gold nanorods were purchased from Nanopartz Inc. CO, USA. Cell culture materials (FBS, DMEM, Penicillin/streptomycin, Glutamate) were purchased from Gibco, Germany. Calcein AM and trypan blue were purchased from VWR chemicals, Germany. All chemicals and reagents were used without additional purification. Except where described otherwise, all solutions were prepared using Milli-Q water (Millipore GmbH Germany) as the solvent. Optical measurements were performed at room temperature under ambient air conditions. UV-vis absorption spectra were recorded with a Synergy UV-vis-near-infrared (BIOTEK, USA) spectrophotometer with ZEN 5 analysis software.
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