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4 protocols using ab205402

1

Immunohistochemical Profiling of Neuronal Activation

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One hour after re-exposure of mice to Context A (Context A -A reactivation or Context B (Context A-B reactivation), mice were intracardially perfused with ice-cold 4% paraformaldehyde in phosphate buffer (pH 7.4, 50 mL per mouse), brains were collected, and immunohistochemistry for GFP, Npas4, and cFos was performed on 50 μm free-floating sections (26 (link)) with primary antibodies against cFos (1:2,000, guinea pig, 226 308, Synaptic Systems), Npas4 (1:10,000, rabbit, Yingxi Lin (27 (link))), or GFP (1:4000, chicken, Abcam ab13970). Brains of all mice were similarly collected and processed for analyzes of virus spread using anti-mCherry antibodies (1:1,000, rabbit, Abcam ab167453 or 1:16,000, chicken, ab205402). Secondary antibodies were obtained from Vector (1:300, biotinylated-anti chicken, anti-mouse, or anti-rabbit IgG). Sections were mounted using Vectashield (Vector) and observed with a confocal laser-scanning microscope (Olympus Fluoview FV10i) (8 , 28 (link)). For light microscopy, signals were visualized with diaminobenzidine (Sigma) (28 (link)).
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2

Multiplexed smFISH and Immunocytochemistry

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smFISH targeting nascent RNA of HES1 or BCL11A were performed using RNAscope® Multiplex Fluorescent Reagent Kit v2(ACDBio). Probes binding the intronic region of target genes were designed and synthesized by ACDBio. FISH signal was labeled with TSA Plus Cyanine 5 (Perkin Elmer). Immunocytochemistry was carried out after FISH procedure [22 ]. Antibodies targeting GFP(Abcam, ab1218), mCherry (Abcam, ab205402), GFAP (Ab4648) and SATB2 (Abcam, ab34735) were incubated overnight. Secondary antibodies including Alexa Fluor 594 Goat anti-chicken IgY secondary antibody (Thermo Fisher Scientific, A11042), Alexa Fluor 488 donkey anti-mouse IgG secondary antibody (Thermo Fisher Scientific, A21202), Alexa Fluor 546 donkey anti-mouse IgG secondary antibody (Thermo Fisher Scientific, A10036) and Alexa Fluor 488 donkey anti-rabbit IgG secondary antibody (Thermo Fisher Scientific, A21206) were incubated at RT for 1hr. Nuclei are stained with DAPI for 5 min before mounting with ProLong™ Gold Antifade Mountant (Thermo Fisher Scientific, P36930).
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3

Lineage Tracing of Tbx3+ Cells

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Livers and plantar skin tissues from 6-week-old Rosa26CAG-LSL-NuM-mCherry;Tbx3CreERT2 mice that had been administered tamoxifen or corn oil were collected and cryoprotected in PBS containing 20% sucrose and frozen in optimal cutting temperature compound. The samples were sectioned, immunostained, fixed with 4% paraformaldehyde, and permeabilized with 0.5% Triton X-100 in Tris-buffered saline for 15 min at room temperature. Then, the sections were blocked with Blocking-One Histo (Nacalai Tesque) at room temperature for 1 h, incubated with primary antibodies at 4 °C overnight, washed, and incubated for 1 h with secondary antibodies. The samples were mounted using VECTASHIELD PLUS Antifade Mounting Medium with DAPI (Vector Laboratories). The primary antibodies were anti-Tbx3 (rabbit, 1:200, ab99302; Abcam), anti-mCherry (chicken, 1:1000, ab205402; Abcam), anti-HNF4a (goat, 1:500, sc-6556; Santa Cruz Biotechnology), and anti-CD49f (rat, 1:500, 313602; Biolegend). The secondary antibodies were Alexa Fluor 488-conjugated anti-rabbit, Cy3-conjugated anti-chicken, Alexa647-conjugated anti-mouse, and Alexa647-conjugated anti-rat (Jackson ImmunoResearch, West Grove, PA, USA). All images were acquired using an Olympus FV3000 confocal microscope.
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4

Nascent HES1 RNA in Cortical Neurons

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Primary cells dissected from developmental dorsal cortex were cultured on coverslips and infected with lenti-virus expressing either GFP or mCherry. Cells were fixed in 4% PFA on Day 4 for staining. RNAscope and Immunocytochemistry staining smFISH targeting nascent RNA of HES1 was performed using RNAscope® Multiplex Fluorescent Reagent Kit v2(ACDBio). Probes binding the intronic region of HES1 were designed and synthesized by ACDBio. FISH signal was labeled with TSA Plus Cyanine 5 (Perkin Elmer). Immunocytochemistry was carried out after FISH procedure. Antibodies targeting GFP(Abcam, ab1218) and mCherry (Abcam, ab205402) were incubated overnight. Secondary antibodies including Alexa Fluor 594 Goat anti-chicken IgY secondary antibody (Thermo Fisher Scientific, A11042) and Alexa Fluor 488 donkey anti-mouse IgG secondary antibody (Thermo Fisher Scientific, A21202) were incubated at RT for 1hr. Nuclei are stained with DAPI for 5 min before mounting with ProLong™ Gold Antifade Mountant (Thermo Fisher Scientific, P36930).
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